Computing cord length in V4.0.0


#1

Dear SCT team,

With the recent removal of -p from sct_process_segmentation, is there a simple way to measure cord length? I have obtained CSA and shape analysis values but I was also somewhat interested in variability in cord length in C1:C3. Perhaps I am simply missing something, in which case I apologize in advance.

Regards,
Andrés.


#2

Andrés,

you are right. This feature was removed after an important refactoring of sct_process_segmentation, but we can put it back. Ticket was opened here (suggestions are welcome).

Best,
Julien


#3

Many thanks for your response, Julien.

Yes, I thought it had probably been removed with the refactoring, but I needed confirmation that it had not been moved somewhere else.

I would indeed appreciate if it were put back in. Thanks for opening the ticket for me.


#4

Hello!

We would like to know if there has been any change with this issue!
And we don’t know whether the documentation in sourceforge.net web is still updated.
In the sct_process_segmentation there, the -p length option is still showed which may
produce some confusion!

thanks!


#5

Thank you for the reminder @Aran. I have increased the level of priority for the ticket (–> HIGH), and I have also updated the doc on sourceforge.


#6

@Aran I’ve implemented a fix in this PR. It would be great if you could review/test it before we merge it with the master development branch.


#7

Hello Julien!

We have tested and it works perfectly!

thank you very much!