I just started new position at the Multiple Sclerosis center in Tel-Hashomer hospital, Israel.
My position is to assimilation SCT for research purpose.
After installing the SCT on my linux OS I’ve got some trouble with understanding the working flow and the platform.
Does the main use of the software goes through the terminal?
(At first I expected a graphic platform or something similar).
Is there a list of the commands which can give me guidelines for using the SCT functionality?
How can I view images with the FSLeyes viewer?
what do I need to change inside the batch_processing.sh for different subjects data?
The SCT support comparing multiple MRI scans from different dates, or different patients, simultaneously, and analysis differences or some progress, for statistical conclusions?
In general, how can I get started using this amazing tool?
I am a student, studying Computer science and Brain science. I have experience with linux OS, nevertheless, find the SCT tool very complex and challenging. I am the first one to use SCT in the MS center, so I have no one for teaching me.
I hope I have provided a clear picture for my situation and current state as SCT user.
Thanks a lot.