./install_sct Welcome to the SCT installer! SCT version ......... dev Installation type ... in-place Operating system .... osx sudo mode ........... 0 To improve user experience and fix bugs, the SCT development team is using a report system to automatically receive crash reports and errors from users. These reports are anonymous. Do you agree to help us improve SCT? [y]es/[n]o: y --> Crash reports will be sent to the SCT development team. Thank you! SCT will be installed here: [/Users/robertbarry/sct-master] Do you agree? [y]es/[n]o: n Choose install directory. Warning! Give full path (e.g. /usr/django/sct_v3.0): /Applications/SCT/ver_4_0_0_beta_2 Copying source files from /Users/robertbarry/sct-master to /Applications/SCT/ver_4_0_0_beta_2 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Installing conda... >> rm -rf /Applications/SCT/ver_4_0_0_beta_2/python >> mkdir -p /Applications/SCT/ver_4_0_0_beta_2/python % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 20.3M 100 20.3M 0 0 13.8M 0 0:00:01 0:00:01 --:--:-- 13.8M exit status is 0 >> bash /var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/tmp.hsjLrGq2/miniconda.sh -p /Applications/SCT/ver_4_0_0_beta_2/python -b -f PREFIX=/Applications/SCT/ver_4_0_0_beta_2/python installing: python-2.7.12-1 ... installing: conda-env-2.5.2-py27_0 ... installing: openssl-1.0.2h-1 ... installing: pycosat-0.6.1-py27_1 ... installing: pyyaml-3.11-py27_4 ... installing: readline-6.2-2 ... installing: requests-2.10.0-py27_0 ... installing: ruamel_yaml-0.11.14-py27_0 ... installing: sqlite-3.13.0-0 ... installing: tk-8.5.18-0 ... installing: yaml-0.1.6-0 ... installing: zlib-1.2.8-3 ... installing: conda-4.1.11-py27_0 ... installing: pycrypto-2.6.1-py27_4 ... installing: pip-8.1.2-py27_0 ... installing: wheel-0.29.0-py27_0 ... installing: setuptools-23.0.0-py27_0 ... Python 2.7.12 :: Continuum Analytics, Inc. creating default environment... using -f (force) option installation finished. Conda installation successful >> . /Applications/SCT/ver_4_0_0_beta_2/python/bin/activate /Applications/SCT/ver_4_0_0_beta_2/python Fetching package metadata ....... Solving package specifications: .......... Package plan for installation in environment /Applications/SCT/ver_4_0_0_beta_2/python: The following packages will be downloaded: package | build ---------------------------|----------------- conda-env-2.6.0 | 0 601 B asn1crypto-0.22.0 | py27_0 145 KB enum34-1.1.6 | py27_0 54 KB idna-2.6 | py27_0 122 KB ipaddress-1.0.18 | py27_0 30 KB pycparser-2.18 | py27_0 166 KB pyparsing-2.2.0 | py27_0 93 KB pytz-2017.2 | py27_0 203 KB requests-2.14.2 | py27_0 701 KB six-1.10.0 | py27_0 16 KB cffi-1.10.0 | py27_0 195 KB clyent-1.2.2 | py27_0 15 KB packaging-16.8 | py27_0 29 KB python-dateutil-2.6.1 | py27_0 236 KB anaconda-client-1.6.3 | py27_0 129 KB cryptography-1.8.1 | py27_0 468 KB pyopenssl-17.0.0 | py27_0 73 KB conda-4.3.30 | py27h407ed3a_0 507 KB ------------------------------------------------------------ Total: 3.1 MB The following NEW packages will be INSTALLED: anaconda-client: 1.6.3-py27_0 asn1crypto: 0.22.0-py27_0 cffi: 1.10.0-py27_0 clyent: 1.2.2-py27_0 cryptography: 1.8.1-py27_0 enum34: 1.1.6-py27_0 idna: 2.6-py27_0 ipaddress: 1.0.18-py27_0 packaging: 16.8-py27_0 pycparser: 2.18-py27_0 pyopenssl: 17.0.0-py27_0 pyparsing: 2.2.0-py27_0 python-dateutil: 2.6.1-py27_0 pytz: 2017.2-py27_0 six: 1.10.0-py27_0 The following packages will be UPDATED: conda: 4.1.11-py27_0 --> 4.3.30-py27h407ed3a_0 conda-env: 2.5.2-py27_0 --> 2.6.0-0 requests: 2.10.0-py27_0 --> 2.14.2-py27_0 Fetching packages ... conda-env-2.6. 100% |################################################################################| Time: 0:00:00 282.57 kB/s asn1crypto-0.2 100% |################################################################################| Time: 0:00:00 10.34 MB/s enum34-1.1.6-p 100% |################################################################################| Time: 0:00:00 4.65 MB/s idna-2.6-py27_ 100% |################################################################################| Time: 0:00:00 5.90 MB/s ipaddress-1.0. 100% |################################################################################| Time: 0:00:00 5.26 MB/s pycparser-2.18 100% |################################################################################| Time: 0:00:00 10.96 MB/s pyparsing-2.2. 100% |################################################################################| Time: 0:00:00 5.80 MB/s pytz-2017.2-py 100% |################################################################################| Time: 0:00:00 13.15 MB/s requests-2.14. 100% |################################################################################| Time: 0:00:00 8.06 MB/s six-1.10.0-py2 100% |################################################################################| Time: 0:00:00 2.07 MB/s cffi-1.10.0-py 100% |################################################################################| Time: 0:00:00 3.77 MB/s clyent-1.2.2-p 100% |################################################################################| Time: 0:00:00 4.19 MB/s packaging-16.8 100% |################################################################################| Time: 0:00:00 2.95 MB/s python-dateuti 100% |################################################################################| Time: 0:00:00 4.73 MB/s anaconda-clien 100% |################################################################################| Time: 0:00:00 3.95 MB/s cryptography-1 100% |################################################################################| Time: 0:00:00 5.80 MB/s pyopenssl-17.0 100% |################################################################################| Time: 0:00:00 6.31 MB/s conda-4.3.30-p 100% |################################################################################| Time: 0:00:00 10.02 MB/s Extracting packages ... [ COMPLETE ]|###################################################################################################| 100% Unlinking packages ... [ COMPLETE ]|###################################################################################################| 100% Linking packages ... [ COMPLETE ]|###################################################################################################| 100% Installing Python dependencies... Fetching package metadata ............. Solving package specifications: . Package plan for installation in environment /Applications/SCT/ver_4_0_0_beta_2/python: The following NEW packages will be INSTALLED: backports: 1.0-py_2 conda-forge backports.functools_lru_cache: 1.5-py_1 conda-forge backports.weakref: 1.0rc1-py27_1 conda-forge backports_abc: 0.5-py_1 conda-forge blas: 1.1-openblas conda-forge bleach: 1.5.0-py27_0 conda-forge ca-certificates: 2019.3.9-hecc5488_0 conda-forge certifi: 2019.3.9-py27_0 conda-forge chardet: 3.0.4-py27_1003 conda-forge cloudpickle: 0.8.1-py_0 conda-forge cycler: 0.10.0-py_1 conda-forge cytoolz: 0.9.0.1-py27h1de35cc_1001 conda-forge dask-core: 1.2.0-py_0 conda-forge decorator: 4.4.0-py_0 conda-forge freetype: 2.10.0-h24853df_0 conda-forge funcsigs: 1.0.2-py_3 conda-forge functools32: 3.2.3.2-py_3 conda-forge futures: 3.2.0-py27_1000 conda-forge html5lib: 0.9999999-py27_0 conda-forge imageio: 2.5.0-py27_0 conda-forge intel-openmp: 2019.3-199 jpeg: 9c-h1de35cc_1001 conda-forge kiwisolver: 1.0.1-py27h04f5b5a_1002 conda-forge libblas: 3.8.0-5_hd44dcd8_netlib conda-forge libcblas: 3.8.0-5_hd44dcd8_netlib conda-forge libcxx: 8.0.0-2 conda-forge libcxxabi: 8.0.0-2 conda-forge libgfortran: 3.0.1-0 conda-forge liblapack: 3.8.0-5_hd44dcd8_netlib conda-forge libpng: 1.6.37-h2573ce8_0 conda-forge libprotobuf: 3.7.1-hfbae3c0_0 conda-forge libtiff: 4.0.10-h79f4b77_1001 conda-forge markdown: 2.6.11-py_0 conda-forge matplotlib: 2.2.3-py27_1 conda-forge matplotlib-base: 2.2.3-py27hd64abcd_1 conda-forge mkl: 2018.0.3-1 mkl-service: 1.1.2-py27h6b9c3cc_4 mock: 2.0.0-py27_1001 conda-forge networkx: 2.2-py_1 conda-forge numpy: 1.11.3-py27_blas_openblas_201 conda-forge [blas_openblas] olefile: 0.46-py_0 conda-forge openblas: 0.2.18-6 conda-forge pandas: 0.23.4-py27h1702cab_1000 conda-forge pbr: 5.1.3-py_0 conda-forge pillow: 6.0.0-py27h7095ceb_0 conda-forge protobuf: 3.7.1-py27h6de7cb9_0 conda-forge psutil: 5.6.1-py27h1de35cc_0 conda-forge pyqt: 4.11.4-py27_2 conda-forge pysocks: 1.6.8-py27_1002 conda-forge pywavelets: 1.0.3-py27h1e5eb4f_1 conda-forge qt: 4.8.7-1 scikit-image: 0.14.2-py27h0a44026_1 conda-forge scikit-learn: 0.17.1-np111py27_blas_openblas_202 conda-forge [blas_openblas] scipy: 1.2.1-py27hbd7caa9_1 conda-forge singledispatch: 3.4.0.3-py27_1000 conda-forge sip: 4.18-py27_1 conda-forge subprocess32: 3.5.3-py27h470a237_0 conda-forge tensorflow: 1.3.0-py27_0 conda-forge toolz: 0.9.0-py_1 conda-forge tornado: 5.1.1-py27h1de35cc_1000 conda-forge urllib3: 1.24.2-py27_0 conda-forge webencodings: 0.5.1-py_1 conda-forge werkzeug: 0.15.2-py_0 conda-forge xlrd: 1.2.0-py_0 conda-forge xlutils: 2.0.0-py27_1 xlwt: 1.3.0-py_1 conda-forge xz: 5.2.4-h1de35cc_1001 conda-forge The following packages will be UPDATED: conda: 4.3.30-py27h407ed3a_0 --> 4.6.14-py27_0 conda-forge conda-env: 2.6.0-0 --> 2.6.0-1 conda-forge cryptography: 1.8.1-py27_0 --> 2.6.1-py27h212c5bf_0 conda-forge openssl: 1.0.2h-1 --> 1.1.1b-h01d97ff_2 conda-forge pip: 8.1.2-py27_0 --> 19.0.3-py27_0 conda-forge pycosat: 0.6.1-py27_1 --> 0.6.3-py27h1de35cc_1001 conda-forge requests: 2.14.2-py27_0 --> 2.21.0-py27_1000 conda-forge setuptools: 23.0.0-py27_0 --> 41.0.1-py27_0 conda-forge tk: 8.5.18-0 --> 8.6.9-ha441bb4_1001 conda-forge zlib: 1.2.8-3 --> 1.2.11-h1de35cc_1004 conda-forge The following packages will be DOWNGRADED: python: 2.7.12-1 --> 2.7.3-5 ca-certificate 100% |################################################################################| Time: 0:00:00 3.20 MB/s conda-env-2.6. 100% |################################################################################| Time: 0:00:00 4.01 MB/s intel-openmp-2 100% |################################################################################| Time: 0:00:00 11.12 MB/s jpeg-9c-h1de35 100% |################################################################################| Time: 0:00:00 11.70 MB/s libcxxabi-8.0. 100% |################################################################################| Time: 0:00:00 13.84 MB/s libgfortran-3. 100% |################################################################################| Time: 0:00:00 10.69 MB/s xz-5.2.4-h1de3 100% |################################################################################| Time: 0:00:00 13.15 MB/s zlib-1.2.11-h1 100% |################################################################################| Time: 0:00:00 36.95 MB/s libblas-3.8.0- 100% |################################################################################| Time: 0:00:00 16.24 MB/s libcxx-8.0.0-2 100% |################################################################################| Time: 0:00:00 9.22 MB/s libpng-1.6.37- 100% |################################################################################| Time: 0:00:00 13.10 MB/s mkl-2018.0.3-1 100% |################################################################################| Time: 0:00:17 9.15 MB/s openblas-0.2.1 100% |################################################################################| Time: 0:00:00 25.70 MB/s openssl-1.1.1b 100% |################################################################################| Time: 0:00:00 41.56 MB/s python-2.7.3-5 100% |################################################################################| Time: 0:00:00 29.37 MB/s tk-8.6.9-ha441 100% |################################################################################| Time: 0:00:00 31.89 MB/s backports-1.0- 100% |################################################################################| Time: 0:00:00 2.56 MB/s backports_abc- 100% |################################################################################| Time: 0:00:00 3.99 MB/s blas-1.1-openb 100% |################################################################################| Time: 0:00:00 682.52 kB/s certifi-2019.3 100% |################################################################################| Time: 0:00:00 39.13 MB/s chardet-3.0.4- 100% |################################################################################| Time: 0:00:00 32.43 MB/s cloudpickle-0. 100% |################################################################################| Time: 0:00:00 9.24 MB/s dask-core-1.2. 100% |################################################################################| Time: 0:00:00 23.88 MB/s decorator-4.4. 100% |################################################################################| Time: 0:00:00 12.20 MB/s freetype-2.10. 100% |################################################################################| Time: 0:00:00 23.23 MB/s funcsigs-1.0.2 100% |################################################################################| Time: 0:00:00 14.86 MB/s functools32-3. 100% |################################################################################| Time: 0:00:00 5.68 MB/s futures-3.2.0- 100% |################################################################################| Time: 0:00:00 11.78 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|################################################################################| Time: 0:00:00 22.37 MB/s psutil-5.6.1-p 100% |################################################################################| Time: 0:00:00 39.51 MB/s pycosat-0.6.3- 100% |################################################################################| Time: 0:00:00 34.27 MB/s pysocks-1.6.8- 100% |################################################################################| Time: 0:00:00 6.77 MB/s sip-4.18-py27_ 100% |################################################################################| Time: 0:00:00 26.51 MB/s subprocess32-3 100% |################################################################################| Time: 0:00:00 28.62 MB/s toolz-0.9.0-py 100% |################################################################################| Time: 0:00:00 17.15 MB/s webencodings-0 100% |################################################################################| Time: 0:00:00 7.34 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|################################################################################| Time: 0:00:00 15.22 MB/s pillow-6.0.0-p 100% |################################################################################| Time: 0:00:00 45.12 MB/s qt-4.8.7-1.tar 100% |################################################################################| Time: 0:00:01 23.14 MB/s setuptools-41. 100% |################################################################################| Time: 0:00:00 27.12 MB/s singledispatch 100% |################################################################################| Time: 0:00:00 19.40 MB/s xlutils-2.0.0- 100% |################################################################################| Time: 0:00:00 15.53 MB/s backports.func 100% |################################################################################| Time: 0:00:00 7.04 MB/s bleach-1.5.0-p 100% |################################################################################| Time: 0:00:00 15.14 MB/s cryptography-2 100% |################################################################################| Time: 0:00:00 24.72 MB/s imageio-2.5.0- 100% |################################################################################| Time: 0:00:00 39.80 MB/s networkx-2.2-p 100% |################################################################################| Time: 0:00:00 45.96 MB/s pandas-0.23.4- 100% |################################################################################| Time: 0:00:00 36.39 MB/s pip-19.0.3-py2 100% |################################################################################| Time: 0:00:00 32.66 MB/s protobuf-3.7.1 100% |################################################################################| Time: 0:00:00 41.58 MB/s pyqt-4.11.4-py 100% |################################################################################| Time: 0:00:00 34.83 MB/s pywavelets-1.0 100% |################################################################################| Time: 0:00:00 38.30 MB/s scipy-1.2.1-py 100% |################################################################################| Time: 0:00:00 41.79 MB/s tornado-5.1.1- 100% |################################################################################| Time: 0:00:00 46.34 MB/s matplotlib-bas 100% |################################################################################| Time: 0:00:00 34.89 MB/s pbr-5.1.3-py_0 100% |################################################################################| Time: 0:00:00 34.39 MB/s scikit-learn-0 100% |################################################################################| Time: 0:00:00 32.29 MB/s matplotlib-2.2 100% |################################################################################| Time: 0:00:00 10.24 MB/s mock-2.0.0-py2 100% |################################################################################| Time: 0:00:00 32.94 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The next version of cryptography will remove support. Please upgrade to a 2.7.x release that supports hmac.compare_digest as soon as possible. utils.PersistentlyDeprecated2018, DEPRECATION: Python 2.7 will reach the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 won't be maintained after that date. A future version of pip will drop support for Python 2.7. Obtaining file:///Applications/SCT/ver_4_0_0_beta_2 Collecting Keras (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/5e/10/aa32dad071ce52b5502266b5c659451cfd6ffcbf14e6c8c4f16c0ff5aaab/Keras-2.2.4-py2.py3-none-any.whl (312kB) 100% |████████████████████████████████| 317kB 8.4MB/s Collecting dipy (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/e1/30/f1b41ecf027429bc8d714c776f40690ce1d3f28e891f061fe5617ce8b8bf/dipy-0.16.0.tar.gz (11.4MB) 100% |████████████████████████████████| 11.4MB 1.6MB/s Requirement already satisfied: futures in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (3.2.0) Collecting h5py (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/98/06/0e711ae0c95d92ec238218448a15c23590cb117ded59e4bfa322b085b59e/h5py-2.9.0-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (6.1MB) 100% |████████████████████████████████| 6.1MB 2.5MB/s Requirement already satisfied: matplotlib in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (2.2.3) Collecting nibabel (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/bc/d4/64957ef575ac6b47d02f7195347e3444538ab633460ff6e99d2acc304223/nibabel-2.4.0-py2-none-any.whl (3.3MB) 100% |████████████████████████████████| 3.3MB 3.9MB/s Collecting nipy (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/ed/7f/c4e27b1701ce1fc86cfe7c75c981ccab9be30f38dd409dcc2b1a50c0b4e2/nipy-0.4.2-cp27-cp27m-macosx_10_6_intel.macosx_10_9_intel.macosx_10_9_x86_64.macosx_10_10_intel.macosx_10_10_x86_64.whl (3.6MB) 100% |████████████████████████████████| 3.6MB 3.1MB/s Requirement already satisfied: pandas in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (0.23.4) Requirement already satisfied: psutil in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (5.6.1) Collecting raven (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/bd/8e/62e26a88c0a1bbae677200baf0767c1022321a6555634f8129e6d55c5ddc/raven-6.10.0-py2.py3-none-any.whl (284kB) 100% |████████████████████████████████| 286kB 4.1MB/s Requirement already satisfied: requests in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (2.21.0) Requirement already satisfied: numpy in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (1.11.3) Requirement already satisfied: scipy in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (1.2.1) Requirement already satisfied: scikit-image in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (0.14.2) Requirement already satisfied: scikit-learn==0.17.1 in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (0.17.1) Requirement already satisfied: tensorflow==1.3.0 in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (1.3.0) Requirement already satisfied: xlrd in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (1.2.0) Requirement already satisfied: xlutils in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (2.0.0) Requirement already satisfied: xlwt in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (1.3.0) Collecting tqdm (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/6c/4b/c38b5144cf167c4f52288517436ccafefe9dc01b8d1c190e18a6b154cd4a/tqdm-4.31.1-py2.py3-none-any.whl (48kB) 100% |████████████████████████████████| 51kB 8.3MB/s Collecting transforms3d (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/b5/f7/e85809168a548a854d7c1331560c27b4f5381698d29c12e57759192b2bc1/transforms3d-0.3.1.tar.gz (62kB) 100% |████████████████████████████████| 71kB 5.5MB/s Requirement already satisfied: urllib3[secure] in ./python/lib/python2.7/site-packages (from spinalcordtoolbox===dev) (1.24.2) Collecting portalocker (from spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/eb/48/bf5e330d7d6d57d92157480db9ccad84da86efd045205f7133a53b29aace/portalocker-1.4.0-py2.py3-none-any.whl Collecting keras-applications>=1.0.6 (from Keras->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/90/85/64c82949765cfb246bbdaf5aca2d55f400f792655927a017710a78445def/Keras_Applications-1.0.7-py2.py3-none-any.whl (51kB) 100% |████████████████████████████████| 61kB 8.8MB/s Requirement already satisfied: pyyaml in ./python/lib/python2.7/site-packages (from Keras->spinalcordtoolbox===dev) (3.11) Collecting keras-preprocessing>=1.0.5 (from Keras->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/c0/bf/0315ef6a9fd3fc2346e85b0ff1f5f83ca17073f2c31ac719ab2e4da0d4a3/Keras_Preprocessing-1.0.9-py2.py3-none-any.whl (59kB) 100% |████████████████████████████████| 61kB 7.4MB/s Requirement already satisfied: six>=1.9.0 in ./python/lib/python2.7/site-packages (from Keras->spinalcordtoolbox===dev) (1.10.0) Requirement already satisfied: cycler>=0.10 in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (0.10.0) Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (2.2.0) Requirement already satisfied: python-dateutil>=2.1 in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (2.6.1) Requirement already satisfied: pytz in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (2017.2) Requirement already satisfied: kiwisolver>=1.0.1 in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (1.0.1) Requirement already satisfied: backports.functools_lru_cache in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (1.5) Requirement already satisfied: subprocess32 in ./python/lib/python2.7/site-packages (from matplotlib->spinalcordtoolbox===dev) (3.5.3) Collecting bz2file; python_version < "3.0" (from nibabel->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/61/39/122222b5e85cd41c391b68a99ee296584b2a2d1d233e7ee32b4532384f2d/bz2file-0.98.tar.gz Collecting sympy>=0.7.0 (from nipy->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/21/21/f4105795ca7f35c541d82c5b06be684dd2f5cb4f508fb487cd7aea4de776/sympy-1.4-py2.py3-none-any.whl (5.3MB) 100% |████████████████████████████████| 5.3MB 2.5MB/s Collecting contextlib2; python_version < "3.2" (from raven->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/a2/71/8273a7eeed0aff6a854237ab5453bc9aa67deb49df4832801c21f0ff3782/contextlib2-0.5.5-py2.py3-none-any.whl Requirement already satisfied: certifi>=2017.4.17 in ./python/lib/python2.7/site-packages (from requests->spinalcordtoolbox===dev) (2019.3.9) Requirement already satisfied: idna<2.9,>=2.5 in ./python/lib/python2.7/site-packages (from requests->spinalcordtoolbox===dev) (2.6) Requirement already satisfied: chardet<3.1.0,>=3.0.2 in ./python/lib/python2.7/site-packages (from requests->spinalcordtoolbox===dev) (3.0.4) Requirement already satisfied: networkx>=1.8 in ./python/lib/python2.7/site-packages (from scikit-image->spinalcordtoolbox===dev) (2.2) Requirement already satisfied: pillow>=4.3.0 in ./python/lib/python2.7/site-packages (from scikit-image->spinalcordtoolbox===dev) (6.0.0) Requirement already satisfied: PyWavelets>=0.4.0 in ./python/lib/python2.7/site-packages (from scikit-image->spinalcordtoolbox===dev) (1.0.3) Requirement already satisfied: dask[array]>=1.0.0 in ./python/lib/python2.7/site-packages (from scikit-image->spinalcordtoolbox===dev) (1.2.0) Requirement already satisfied: cloudpickle>=0.2.1 in ./python/lib/python2.7/site-packages (from scikit-image->spinalcordtoolbox===dev) (0.8.1) Requirement already satisfied: mock>=2.0.0 in ./python/lib/python2.7/site-packages (from tensorflow==1.3.0->spinalcordtoolbox===dev) (2.0.0) Requirement already satisfied: wheel in ./python/lib/python2.7/site-packages (from tensorflow==1.3.0->spinalcordtoolbox===dev) (0.29.0) Requirement already satisfied: backports.weakref>=1.0rc1 in ./python/lib/python2.7/site-packages (from tensorflow==1.3.0->spinalcordtoolbox===dev) (1.0rc1) Collecting tensorflow-tensorboard<0.2.0,>=0.1.0 (from tensorflow==1.3.0->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/fb/34/14c23665a725c73932891e09b8f017a53aad545c9d5019d2817102dc5d9b/tensorflow_tensorboard-0.1.8-py2-none-any.whl (1.6MB) 100% |████████████████████████████████| 1.6MB 4.5MB/s Requirement already satisfied: protobuf>=3.3.0 in ./python/lib/python2.7/site-packages (from tensorflow==1.3.0->spinalcordtoolbox===dev) (3.7.1) Requirement already satisfied: pyOpenSSL>=0.14 in ./python/lib/python2.7/site-packages (from urllib3[secure]->spinalcordtoolbox===dev) (17.0.0) Requirement already satisfied: cryptography>=1.3.4 in ./python/lib/python2.7/site-packages (from urllib3[secure]->spinalcordtoolbox===dev) (2.6.1) Requirement already satisfied: ipaddress in ./python/lib/python2.7/site-packages (from urllib3[secure]->spinalcordtoolbox===dev) (1.0.18) Requirement already satisfied: setuptools in ./python/lib/python2.7/site-packages (from kiwisolver>=1.0.1->matplotlib->spinalcordtoolbox===dev) (41.0.1) Collecting mpmath>=0.19 (from sympy>=0.7.0->nipy->spinalcordtoolbox===dev) Downloading https://files.pythonhosted.org/packages/ca/63/3384ebb3b51af9610086b23ea976e6d27d6d97bf140a76a365bd77a3eb32/mpmath-1.1.0.tar.gz (512kB) 100% |████████████████████████████████| 522kB 6.3MB/s Requirement already satisfied: decorator>=4.3.0 in ./python/lib/python2.7/site-packages (from networkx>=1.8->scikit-image->spinalcordtoolbox===dev) (4.4.0) Requirement already satisfied: toolz>=0.7.3; extra == "array" in ./python/lib/python2.7/site-packages (from dask[array]>=1.0.0->scikit-image->spinalcordtoolbox===dev) (0.9.0) Requirement already satisfied: funcsigs>=1; python_version < "3.3" in ./python/lib/python2.7/site-packages (from mock>=2.0.0->tensorflow==1.3.0->spinalcordtoolbox===dev) (1.0.2) Requirement already satisfied: pbr>=0.11 in ./python/lib/python2.7/site-packages (from mock>=2.0.0->tensorflow==1.3.0->spinalcordtoolbox===dev) (5.1.3) Requirement already satisfied: bleach==1.5.0 in ./python/lib/python2.7/site-packages (from tensorflow-tensorboard<0.2.0,>=0.1.0->tensorflow==1.3.0->spinalcordtoolbox===dev) (1.5.0) Requirement already satisfied: html5lib==0.9999999 in ./python/lib/python2.7/site-packages (from tensorflow-tensorboard<0.2.0,>=0.1.0->tensorflow==1.3.0->spinalcordtoolbox===dev) (0.9999999) Requirement already satisfied: werkzeug>=0.11.10 in ./python/lib/python2.7/site-packages (from tensorflow-tensorboard<0.2.0,>=0.1.0->tensorflow==1.3.0->spinalcordtoolbox===dev) (0.15.2) Requirement already satisfied: markdown>=2.6.8 in ./python/lib/python2.7/site-packages (from tensorflow-tensorboard<0.2.0,>=0.1.0->tensorflow==1.3.0->spinalcordtoolbox===dev) (2.6.11) Requirement already satisfied: enum34; python_version < "3" in ./python/lib/python2.7/site-packages (from cryptography>=1.3.4->urllib3[secure]->spinalcordtoolbox===dev) (1.1.6) Requirement already satisfied: asn1crypto>=0.21.0 in ./python/lib/python2.7/site-packages (from cryptography>=1.3.4->urllib3[secure]->spinalcordtoolbox===dev) (0.22.0) Requirement already satisfied: cffi!=1.11.3,>=1.8 in ./python/lib/python2.7/site-packages (from cryptography>=1.3.4->urllib3[secure]->spinalcordtoolbox===dev) (1.10.0) Requirement already satisfied: pycparser in ./python/lib/python2.7/site-packages (from cffi!=1.11.3,>=1.8->cryptography>=1.3.4->urllib3[secure]->spinalcordtoolbox===dev) (2.18) Building wheels for collected packages: dipy, transforms3d, bz2file, mpmath Building wheel for dipy (setup.py) ... error Complete output from command /Applications/SCT/ver_4_0_0_beta_2/python/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-install-hSJMKG/dipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" bdist_wheel -d /private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-wheel-2Zj3cq --python-tag cp27: running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.5-x86_64-2.7 creating build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/conftest.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/__config__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/pkg_info.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/info.py -> build/lib.macosx-10.5-x86_64-2.7/dipy creating build/lib.macosx-10.5-x86_64-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align creating build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_whole_brain_slr.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/rng.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/profile.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/graph.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/wavelet.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core creating build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction creating build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_bootstrap_direction_getter.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_pmf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_interpolation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_fbc.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/benchmarks creating build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/fwdti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/qtdmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/forecast.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dki_micro.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/ivim.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst creating build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks creating build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki_micro.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_forecast.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_fwdti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_qtdmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_ivim.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/vtk.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/image.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io creating build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/app.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/panel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz creating build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_apps.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing creating build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/boots creating build/lib.macosx-10.5-x86_64-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data creating build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) creating build/lib.macosx-10.5-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_data.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_fetcher.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_omp.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/fixes creating build/lib.macosx-10.5-x86_64-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/external creating build/lib.macosx-10.5-x86_64-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/external/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/tissue.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/bundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment creating build/lib.macosx-10.5-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/benchmarks creating build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_bundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_refine_rb.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_adjustment.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mrf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qbx.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims creating build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/stats copying dipy/stats/analysis.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/stats copying dipy/stats/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/stats package init file 'dipy/stats/tests/__init__.py' not found (or not a regular file) creating build/lib.macosx-10.5-x86_64-2.7/dipy/stats/tests copying dipy/stats/tests/test_ba.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/stats/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/non_local_means.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/localpca.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/adaptive_soft_matching.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise creating build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_ascm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_non_local_means.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_lpca.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/mask.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/multi_io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/combined_workflow.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/align.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/flow_runner.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/stats.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/workflow.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/denoise.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/viz.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/tracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows creating build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_stats.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/workflow_tests_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_ivim.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dki.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_masking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_workflow.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_tracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_viz.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_align.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_mapmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_csa_csd.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_text_block.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion200.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/ascm_out_test.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) package init file 'dipy/stats/tests/__init__.py' not found (or not a regular file) running build_ext gcc -fno-strict-aliasing -I/Applications/SCT/ver_4_0_0_beta_2/python/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Applications/SCT/ver_4_0_0_beta_2/python/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse gcc -bundle -undefined dynamic_lookup -L/Applications/SCT/ver_4_0_0_beta_2/python/lib -arch x86_64 -arch x86_64 test.o -o libtestlib.so ld: library not found for -lgcc_s.10.5 clang: error: linker command failed with exit code 1 (use -v to see invocation) Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error gcc -fno-strict-aliasing -I/Applications/SCT/ver_4_0_0_beta_2/python/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Applications/SCT/ver_4_0_0_beta_2/python/include/python2.7 -c test.c -o test.o -fopenmp clang: error: unsupported option '-fopenmp' Flags ['-fopenmp', '-fopenmp'] omitted because of compile or link error building 'dipy.direction.pmf' extension creating build/temp.macosx-10.5-x86_64-2.7 creating build/temp.macosx-10.5-x86_64-2.7/dipy creating build/temp.macosx-10.5-x86_64-2.7/dipy/direction gcc -fno-strict-aliasing -I/Applications/SCT/ver_4_0_0_beta_2/python/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Isrc -I/Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include -Ibuild -I/Applications/SCT/ver_4_0_0_beta_2/python/include/python2.7 -c dipy/direction/pmf.c -o build/temp.macosx-10.5-x86_64-2.7/dipy/direction/pmf.o In file included from dipy/direction/pmf.c:613: In file included from /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: In file included from /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777: /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. gcc -bundle -undefined dynamic_lookup -L/Applications/SCT/ver_4_0_0_beta_2/python/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/dipy/direction/pmf.o -o build/lib.macosx-10.5-x86_64-2.7/dipy/direction/pmf.so ld: library not found for -lgcc_s.10.5 clang: error: linker command failed with exit code 1 (use -v to see invocation) error: command 'gcc' failed with exit status 1 ---------------------------------------- Failed building wheel for dipy Running setup.py clean for dipy Building wheel for transforms3d (setup.py) ... done Stored in directory: /Users/robertbarry/Library/Caches/pip/wheels/3d/3c/84/28d36677f3c760c048bd02b5a547ea0c4027770cc9cdb9af1e Building wheel for bz2file (setup.py) ... done Stored in directory: /Users/robertbarry/Library/Caches/pip/wheels/81/75/d6/e1317bf09bf1af5a30befc2a007869fa6e1f516b8f7c591cb9 Building wheel for mpmath (setup.py) ... done Stored in directory: /Users/robertbarry/Library/Caches/pip/wheels/63/9d/8e/37c3f6506ed3f152733a699e92d8e0c9f5e5f01dea262f80ad Successfully built transforms3d bz2file mpmath Failed to build dipy Installing collected packages: h5py, keras-applications, keras-preprocessing, Keras, bz2file, nibabel, dipy, mpmath, sympy, nipy, contextlib2, raven, tqdm, transforms3d, portalocker, spinalcordtoolbox, tensorflow-tensorboard Running setup.py install for dipy ... error Complete output from command /Applications/SCT/ver_4_0_0_beta_2/python/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-install-hSJMKG/dipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-record-_GIaZH/install-record.txt --single-version-externally-managed --compile: running install running build running build_py creating build/lib.macosx-10.5-x86_64-2.7 creating build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/conftest.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/__config__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/pkg_info.py -> build/lib.macosx-10.5-x86_64-2.7/dipy copying dipy/info.py -> build/lib.macosx-10.5-x86_64-2.7/dipy creating build/lib.macosx-10.5-x86_64-2.7/dipy/tests copying dipy/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tests copying dipy/tests/scriptrunner.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tests copying dipy/tests/test_scripts.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/streamlinear.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/scalespace.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/imaffine.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/imwarp.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align copying dipy/align/reslice.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align creating build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_expectmax.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imwarp.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_vector_fields.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_sumsqdiff.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_whole_brain_slr.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_transforms.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_scalespace.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_streamlinear.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_imaffine.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_crosscorr.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_parzenhist.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests copying dipy/align/tests/test_reslice.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/align/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/optimize.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/rng.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/profile.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/graph.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/subdivide_octahedron.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/ndindex.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/wavelet.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/geometry.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/onetime.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/sphere.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/histeq.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core copying dipy/core/sphere_stats.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core creating build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_ndindex.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_optimize.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_sphere.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_graph.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_geometry.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests copying dipy/core/tests/test_subdivide_octahedron.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/core/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/direction copying dipy/direction/peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction copying dipy/direction/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction creating build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_prob_direction_getter.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_bootstrap_direction_getter.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests copying dipy/direction/tests/test_pmf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/direction/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/eudx.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/life.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/learning.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking copying dipy/tracking/_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local copying dipy/tracking/local/localtracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_interpolation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tissue_classifier.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests copying dipy/tracking/local/tests/test_tracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/local/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_track_volumes.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_learning.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_distances.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_life.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_fbc.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests copying dipy/tracking/tests/test_propagation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/benchmarks copying dipy/tracking/benchmarks/bench_streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/tracking/benchmarks creating build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/fwdti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/qtdmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/shm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/odf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/forecast.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/mapmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dsi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/multi_voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/cache.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/shore.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dki_micro.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/interpolate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/csdeconv.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/ivim.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/gqi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/dki.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/base.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/sfm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst copying dipy/reconst/cross_validation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst creating build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_csd.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_bounding_box.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_squash.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_vec_val_sum.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks copying dipy/reconst/benchmarks/bench_peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/benchmarks creating build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki_micro.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peakdf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_multi_voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cross_validation.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_odf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_odf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_forecast.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_reco_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_fwdti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_csdeconv.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_gqi.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_qtdmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dki.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_vec_val_vect.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_mapmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_sfm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_peak_finding.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_metrics.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_cache.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_shore.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_ivim.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_interpolate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests copying dipy/reconst/tests/test_dsi_deconv.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/reconst/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/trackvis.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/pickles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/vtk.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/dpy.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/bvectxt.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io copying dipy/io/image.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io creating build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_gradients.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_streamline.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_io_peaks.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_dpy.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests copying dipy/io/tests/test_bvectxt.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/io/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/regtools.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/app.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/projections.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz copying dipy/viz/panel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz creating build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_apps.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests copying dipy/viz/tests/test_regtools.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/viz/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/spherepoints.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/memory.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing copying dipy/testing/decorators.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing creating build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_decorators.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests copying dipy/testing/tests/test_memory.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/testing/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/boots copying dipy/boots/resampling.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/boots copying dipy/boots/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/boots creating build/lib.macosx-10.5-x86_64-2.7/dipy/data copying dipy/data/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data copying dipy/data/fetcher.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data creating build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/tripwire.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/six.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/optpkg.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/_importlib.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils copying dipy/utils/arrfuncs.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) creating build/lib.macosx-10.5-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_data.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/tests copying dipy/data/tests/test_fetcher.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_tripwire.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_arrfuncs.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests copying dipy/utils/tests/test_omp.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/utils/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/fixes copying dipy/fixes/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/fixes copying dipy/fixes/scipy.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/fixes creating build/lib.macosx-10.5-x86_64-2.7/dipy/external copying dipy/external/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/external copying dipy/external/fsl.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/external creating build/lib.macosx-10.5-x86_64-2.7/dipy/external/tests copying dipy/external/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/external/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/mask.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/clustering.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/tissue.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/bundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/quickbundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/threshold.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment copying dipy/segment/metric.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment creating build/lib.macosx-10.5-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/benchmarks copying dipy/segment/benchmarks/bench_quickbundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/benchmarks creating build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_metric.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_bundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qb.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_refine_rb.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_adjustment.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mask.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_feature.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_quickbundles.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_mrf.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_qbx.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests copying dipy/segment/tests/test_clustering.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/segment/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/sims copying dipy/sims/phantom.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims copying dipy/sims/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims copying dipy/sims/voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims creating build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_voxel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/test_phantom.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests copying dipy/sims/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/sims/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/stats copying dipy/stats/analysis.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/stats copying dipy/stats/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/stats package init file 'dipy/stats/tests/__init__.py' not found (or not a regular file) creating build/lib.macosx-10.5-x86_64-2.7/dipy/stats/tests copying dipy/stats/tests/test_ba.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/stats/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/non_local_means.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/localpca.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/noise_estimate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/adaptive_soft_matching.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise copying dipy/denoise/nlmeans.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise creating build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_ascm.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_noise_estimate.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_non_local_means.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_nlmeans.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_lpca.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_kernel.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests copying dipy/denoise/tests/test_denoise.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/denoise/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/mask.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/reconst.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/multi_io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/combined_workflow.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/align.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/flow_runner.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/stats.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/workflow.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/segment.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/denoise.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/viz.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/tracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/base.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows copying dipy/workflows/docstring_parser.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows creating build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_stats.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/workflow_tests_utils.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_docstring_parser.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_ivim.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dki.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_masking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_iap.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/__init__.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_io.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_dti.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_workflow.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_tracking.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_viz.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_align.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_mapmri.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_reconst_csa_csd.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests copying dipy/workflows/tests/test_segment.py -> build/lib.macosx-10.5-x86_64-2.7/dipy/workflows/tests creating build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/test_ui_text_block.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/ScannerVectors_GQI101.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvals.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/aniso_vox.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_642.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/fib1.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/func_discrete.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/grad_514.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi4169_b_table.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_weights.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_724.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/dipy_colormaps.json -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/tracks300.trk -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/C.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/life_matlab_rmse.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.gradients.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_3shell.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion724.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/55dir_grad.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/test_piesno.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/cb_2.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_isbi2013_2shell.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/fib2.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/C3.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/func_coef.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion100.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_101D.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/eg_3voxels.pkl -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/C1.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/evenly_distributed_sphere_362.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.nii -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/t1_coronal_slice.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/fib0.pkl.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/gtab_taiwan_dsi.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_64D.bvec -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/S0_10slices.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/small_25.bval -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/sphere_grad.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/dsi515_b_table.txt -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/repulsion200.npz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/circle.npy -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files copying dipy/data/files/ascm_out_test.nii.gz -> build/lib.macosx-10.5-x86_64-2.7/dipy/data/files package init file 'dipy/data/tests/__init__.py' not found (or not a regular file) package init file 'dipy/stats/tests/__init__.py' not found (or not a regular file) running build_ext gcc -fno-strict-aliasing -I/Applications/SCT/ver_4_0_0_beta_2/python/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Applications/SCT/ver_4_0_0_beta_2/python/include/python2.7 -c test.c -o test.o -msse2 -mfpmath=sse gcc -bundle -undefined dynamic_lookup -L/Applications/SCT/ver_4_0_0_beta_2/python/lib -arch x86_64 -arch x86_64 test.o -o libtestlib.so ld: library not found for -lgcc_s.10.5 clang: error: linker command failed with exit code 1 (use -v to see invocation) Flags ['-msse2', '-mfpmath=sse'] omitted because of compile or link error gcc -fno-strict-aliasing -I/Applications/SCT/ver_4_0_0_beta_2/python/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Applications/SCT/ver_4_0_0_beta_2/python/include/python2.7 -c test.c -o test.o -fopenmp clang: error: unsupported option '-fopenmp' Flags ['-fopenmp', '-fopenmp'] omitted because of compile or link error building 'dipy.direction.pmf' extension creating build/temp.macosx-10.5-x86_64-2.7 creating build/temp.macosx-10.5-x86_64-2.7/dipy creating build/temp.macosx-10.5-x86_64-2.7/dipy/direction gcc -fno-strict-aliasing -I/Applications/SCT/ver_4_0_0_beta_2/python/include -arch x86_64 -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -Isrc -I/Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include -Ibuild -I/Applications/SCT/ver_4_0_0_beta_2/python/include/python2.7 -c dipy/direction/pmf.c -o build/temp.macosx-10.5-x86_64-2.7/dipy/direction/pmf.o In file included from dipy/direction/pmf.c:613: In file included from /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:18: In file included from /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1777: /Applications/SCT/ver_4_0_0_beta_2/python/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. gcc -bundle -undefined dynamic_lookup -L/Applications/SCT/ver_4_0_0_beta_2/python/lib -arch x86_64 -arch x86_64 build/temp.macosx-10.5-x86_64-2.7/dipy/direction/pmf.o -o build/lib.macosx-10.5-x86_64-2.7/dipy/direction/pmf.so ld: library not found for -lgcc_s.10.5 clang: error: linker command failed with exit code 1 (use -v to see invocation) error: command 'gcc' failed with exit status 1 ---------------------------------------- Command "/Applications/SCT/ver_4_0_0_beta_2/python/bin/python -u -c "import setuptools, tokenize;__file__='/private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-install-hSJMKG/dipy/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-record-_GIaZH/install-record.txt --single-version-externally-managed --compile" failed with error code 1 in /private/var/folders/r8/0n0npt5567g5kqb759cd5mn40000gp/T/pip-install-hSJMKG/dipy/ Failed to pip install sct, which is quite unexpected. Installation failed