******************************* * Welcome to SCT installation * ******************************* Checking OS type and version... Darwin MACpros-Mac-Pro.local 19.6.0 Darwin Kernel Version 19.6.0: Thu Jun 18 20:49:00 PDT 2020; root:xnu-6153.141.1~1/RELEASE_X86_64 x86_64 ProductVersion: 10.15.6 Checking requirements... OK! SCT version ......... 5.0.0 Installation type ... package Operating system .... osx (15) Shell config ........ /Users/macpronirims/.bashrc To improve user experience and fix bugs, the SCT development team is using a report system to automatically receive crash reports and errors from users. These reports are anonymous. Do you agree to help us improve SCT? [y]es/[n]o: y --> Crash reports will be sent to the SCT development team. Thank you! SCT will be installed here: [/Users/macpronirims/sct_5.0.0] Do you agree? [y]es/[n]o: y Copying source files from /Users/macpronirims/Downloads/spinalcordtoolbox-5.0.0 to /Users/macpronirims/sct_5.0.0 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Installing conda... rm -rf /Users/macpronirims/sct_5.0.0/python mkdir -p /Users/macpronirims/sct_5.0.0/python curl -o /var/folders/sl/lvz0f1gn2v9cfsph2d6p_5b00000gn/T/tmp.YGeXpZGR/miniconda.sh -L https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 53.2M 100 53.2M 0 0 10.6M 0 0:00:04 0:00:04 --:--:-- 11.3M exit status is 0 bash /var/folders/sl/lvz0f1gn2v9cfsph2d6p_5b00000gn/T/tmp.YGeXpZGR/miniconda.sh -p /Users/macpronirims/sct_5.0.0/python -b -f PREFIX=/Users/macpronirims/sct_5.0.0/python Unpacking payload ... Collecting package metadata (current_repodata.json): done Solving environment: done ## Package Plan ## environment location: /Users/macpronirims/sct_5.0.0/python added / updated specs: - ca-certificates==2020.1.1=0 - certifi==2020.4.5.1=py38_0 - cffi==1.14.0=py38hc512035_1 - chardet==3.0.4=py38_1003 - conda-package-handling==1.6.1=py38h1de35cc_0 - conda==4.8.3=py38_0 - cryptography==2.9.2=py38ha12b0ac_0 - idna==2.9=py_1 - libcxx==10.0.0=1 - libedit==3.1.20181209=hb402a30_0 - libffi==3.3=h0a44026_1 - ncurses==6.2=h0a44026_1 - openssl==1.1.1g=h1de35cc_0 - pip==20.0.2=py38_3 - pycosat==0.6.3=py38h1de35cc_1 - pycparser==2.20=py_0 - pyopenssl==19.1.0=py38_0 - pysocks==1.7.1=py38_0 - python.app==2=py38_10 - python==3.8.3=h26836e1_1 - readline==8.0=h1de35cc_0 - requests==2.23.0=py38_0 - ruamel_yaml==0.15.87=py38h1de35cc_0 - setuptools==46.4.0=py38_0 - six==1.14.0=py38_0 - sqlite==3.31.1=h5c1f38d_1 - tk==8.6.8=ha441bb4_0 - tqdm==4.46.0=py_0 - urllib3==1.25.8=py38_0 - wheel==0.34.2=py38_0 - xz==5.2.5=h1de35cc_0 - yaml==0.1.7=hc338f04_2 - zlib==1.2.11=h1de35cc_3 The following NEW packages will be INSTALLED: ca-certificates pkgs/main/osx-64::ca-certificates-2020.1.1-0 certifi pkgs/main/osx-64::certifi-2020.4.5.1-py38_0 cffi pkgs/main/osx-64::cffi-1.14.0-py38hc512035_1 chardet pkgs/main/osx-64::chardet-3.0.4-py38_1003 conda pkgs/main/osx-64::conda-4.8.3-py38_0 conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.6.1-py38h1de35cc_0 cryptography pkgs/main/osx-64::cryptography-2.9.2-py38ha12b0ac_0 idna pkgs/main/noarch::idna-2.9-py_1 libcxx pkgs/main/osx-64::libcxx-10.0.0-1 libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0 libffi pkgs/main/osx-64::libffi-3.3-h0a44026_1 ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_1 openssl pkgs/main/osx-64::openssl-1.1.1g-h1de35cc_0 pip pkgs/main/osx-64::pip-20.0.2-py38_3 pycosat pkgs/main/osx-64::pycosat-0.6.3-py38h1de35cc_1 pycparser pkgs/main/noarch::pycparser-2.20-py_0 pyopenssl pkgs/main/osx-64::pyopenssl-19.1.0-py38_0 pysocks pkgs/main/osx-64::pysocks-1.7.1-py38_0 python pkgs/main/osx-64::python-3.8.3-h26836e1_1 python.app pkgs/main/osx-64::python.app-2-py38_10 readline pkgs/main/osx-64::readline-8.0-h1de35cc_0 requests pkgs/main/osx-64::requests-2.23.0-py38_0 ruamel_yaml pkgs/main/osx-64::ruamel_yaml-0.15.87-py38h1de35cc_0 setuptools pkgs/main/osx-64::setuptools-46.4.0-py38_0 six pkgs/main/osx-64::six-1.14.0-py38_0 sqlite pkgs/main/osx-64::sqlite-3.31.1-h5c1f38d_1 tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0 tqdm pkgs/main/noarch::tqdm-4.46.0-py_0 urllib3 pkgs/main/osx-64::urllib3-1.25.8-py38_0 wheel pkgs/main/osx-64::wheel-0.34.2-py38_0 xz pkgs/main/osx-64::xz-5.2.5-h1de35cc_0 yaml pkgs/main/osx-64::yaml-0.1.7-hc338f04_2 zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3 Preparing transaction: done Executing transaction: done installation finished. Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists. <== current version: 4.8.3 latest version: 4.9.1 Please update conda by running $ conda update -n base -c defaults conda ## Package Plan ## environment location: /Users/macpronirims/sct_5.0.0/python/envs/venv_sct added / updated specs: - python=3.6 The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2020.10.14 | 0 121 KB certifi-2020.6.20 | pyhd3eb1b0_3 155 KB libedit-3.1.20191231 | h1de35cc_1 96 KB libffi-3.3 | hb1e8313_2 44 KB openssl-1.1.1h | haf1e3a3_0 2.2 MB pip-20.2.4 | py36hecd8cb5_0 1.8 MB python-3.6.12 | h26836e1_2 16.9 MB setuptools-50.3.1 | py36hecd8cb5_1 713 KB sqlite-3.33.0 | hffcf06c_0 1.3 MB tk-8.6.10 | hb0a8c7a_0 3.0 MB wheel-0.35.1 | py_0 37 KB ------------------------------------------------------------ Total: 26.2 MB The following NEW packages will be INSTALLED: ca-certificates pkgs/main/osx-64::ca-certificates-2020.10.14-0 certifi pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3 libcxx pkgs/main/osx-64::libcxx-10.0.0-1 libedit pkgs/main/osx-64::libedit-3.1.20191231-h1de35cc_1 libffi pkgs/main/osx-64::libffi-3.3-hb1e8313_2 ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_1 openssl pkgs/main/osx-64::openssl-1.1.1h-haf1e3a3_0 pip pkgs/main/osx-64::pip-20.2.4-py36hecd8cb5_0 python pkgs/main/osx-64::python-3.6.12-h26836e1_2 readline pkgs/main/osx-64::readline-8.0-h1de35cc_0 setuptools pkgs/main/osx-64::setuptools-50.3.1-py36hecd8cb5_1 sqlite pkgs/main/osx-64::sqlite-3.33.0-hffcf06c_0 tk pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0 wheel pkgs/main/noarch::wheel-0.35.1-py_0 xz pkgs/main/osx-64::xz-5.2.5-h1de35cc_0 zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3 Proceed ([y]/n)? Downloading and Extracting Packages python-3.6.12 | 16.9 MB | ######################################################################################### | 100% certifi-2020.6.20 | 155 KB | ######################################################################################### | 100% tk-8.6.10 | 3.0 MB | ######################################################################################### | 100% libffi-3.3 | 44 KB | ######################################################################################### | 100% wheel-0.35.1 | 37 KB | ######################################################################################### | 100% sqlite-3.33.0 | 1.3 MB | ######################################################################################### | 100% setuptools-50.3.1 | 713 KB | ######################################################################################### | 100% pip-20.2.4 | 1.8 MB | ######################################################################################### | 100% openssl-1.1.1h | 2.2 MB | ######################################################################################### | 100% libedit-3.1.20191231 | 96 KB | ######################################################################################### | 100% ca-certificates-2020 | 121 KB | ######################################################################################### | 100% Preparing transaction: done Verifying transaction: done Executing transaction: done # # To activate this environment, use # # $ conda activate venv_sct # # To deactivate an active environment, use # # $ conda deactivate Installing Python dependencies... Using requirements-freeze.txt (release installation) Looking in links: https://download.pytorch.org/whl/cpu/torch_stable.html Ignoring torch: markers 'sys_platform != "darwin"' don't match your environment Ignoring torchvision: markers 'sys_platform != "darwin"' don't match your environment Requirement already satisfied: absl-py==0.11.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 1)) (0.11.0) Requirement already satisfied: apipkg==1.5 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 2)) (1.5) Requirement already satisfied: astor==0.8.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 3)) (0.8.1) Requirement already satisfied: attrs==20.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 4)) (20.3.0) Requirement already satisfied: bids-neuropoly==0.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 5)) (0.2) Requirement already satisfied: bids-validator==1.5.7 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 6)) (1.5.7) Requirement already satisfied: bleach==1.5.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 7)) (1.5.0) Requirement already satisfied: cachetools==4.1.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 8)) (4.1.1) Requirement already satisfied: certifi==2020.6.20 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 9)) (2020.6.20) Requirement already satisfied: cffi==1.14.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 10)) (1.14.3) Requirement already satisfied: chardet==3.0.4 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 11)) (3.0.4) Requirement already satisfied: click==7.1.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 12)) (7.1.2) Requirement already satisfied: colored==1.4.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 13)) (1.4.2) Requirement already satisfied: coverage==5.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 14)) (5.3) Requirement already satisfied: cryptography==3.2.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 15)) (3.2.1) Requirement already satisfied: cycler==0.10.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 16)) (0.10.0) Requirement already satisfied: decorator==4.4.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 17)) (4.4.2) Requirement already satisfied: dipy==1.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 18)) (1.3.0) Requirement already satisfied: docopt==0.6.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 19)) (0.6.2) Requirement already satisfied: execnet==1.7.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 20)) (1.7.1) Requirement already satisfied: future==0.18.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 21)) (0.18.2) Requirement already satisfied: futures==3.1.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 22)) (3.1.1) Requirement already satisfied: gast==0.2.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 23)) (0.2.2) Requirement already satisfied: google-auth==1.23.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 24)) (1.23.0) Requirement already satisfied: google-auth-oauthlib==0.4.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 25)) (0.4.2) Requirement already satisfied: google-pasta==0.2.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 26)) (0.2.0) Requirement already satisfied: grpcio==1.33.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 27)) (1.33.2) Requirement already satisfied: h5py==2.10.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 28)) (2.10.0) Requirement already satisfied: html5lib==0.9999999 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 29)) (0.9999999) Requirement already satisfied: idna==2.10 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 30)) (2.10) Requirement already satisfied: imageio==2.9.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 31)) (2.9.0) Requirement already satisfied: importlib-metadata==2.0.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 32)) (2.0.0) Requirement already satisfied: iniconfig==1.1.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 33)) (1.1.1) Requirement already satisfied: ivadomed==2.4.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 34)) (2.4.0) Requirement already satisfied: joblib==0.17.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 35)) (0.17.0) Requirement already satisfied: Keras==2.1.5 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 36)) (2.1.5) Requirement already satisfied: Keras-Applications==1.0.8 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 37)) (1.0.8) Requirement already satisfied: Keras-Preprocessing==1.1.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 38)) (1.1.2) Requirement already satisfied: kiwisolver==1.3.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 39)) (1.3.1) Requirement already satisfied: Markdown==3.3.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 40)) (3.3.3) Requirement already satisfied: matplotlib==3.3.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 41)) (3.3.2) Requirement already satisfied: mock==4.0.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 42)) (4.0.2) Requirement already satisfied: networkx==2.5 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 43)) (2.5) Requirement already satisfied: nibabel==3.2.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 44)) (3.2.0) Requirement already satisfied: num2words==0.5.10 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 45)) (0.5.10) Requirement already satisfied: numpy==1.19.4 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 46)) (1.19.4) Requirement already satisfied: oauthlib==3.1.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 47)) (3.1.0) Requirement already satisfied: onnxruntime==1.5.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 48)) (1.5.2) Requirement already satisfied: opt-einsum==3.2.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 49)) (3.2.1) Requirement already satisfied: packaging==20.4 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 50)) (20.4) Requirement already satisfied: pandas==1.1.4 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 51)) (1.1.4) Requirement already satisfied: patsy==0.5.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 52)) (0.5.1) Requirement already satisfied: Pillow==8.0.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 53)) (8.0.1) Requirement already satisfied: pluggy==0.13.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 54)) (0.13.1) Requirement already satisfied: protobuf==3.13.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 55)) (3.13.0) Requirement already satisfied: psutil==5.7.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 56)) (5.7.3) Requirement already satisfied: py==1.9.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 57)) (1.9.0) Requirement already satisfied: pyasn1==0.4.8 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 58)) (0.4.8) Requirement already satisfied: pyasn1-modules==0.2.8 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 59)) (0.2.8) Requirement already satisfied: pybids==0.12.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 60)) (0.12.3) Requirement already satisfied: pycparser==2.20 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 61)) (2.20) Requirement already satisfied: pyOpenSSL==19.1.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 62)) (19.1.0) Requirement already satisfied: pyparsing==2.4.7 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 63)) (2.4.7) Requirement already satisfied: PyQt5==5.11.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 64)) (5.11.3) Requirement already satisfied: PyQt5-sip==4.19.19 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 65)) (4.19.19) Requirement already satisfied: pytest==6.1.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 66)) (6.1.2) Requirement already satisfied: pytest-console-scripts==1.0.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 67)) (1.0.0) Requirement already satisfied: pytest-cov==2.10.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 68)) (2.10.1) Requirement already satisfied: pytest-forked==1.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 69)) (1.3.0) Requirement already satisfied: pytest-xdist==2.1.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 70)) (2.1.0) Requirement already satisfied: python-dateutil==2.8.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 71)) (2.8.1) Requirement already satisfied: pytz==2020.4 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 72)) (2020.4) Requirement already satisfied: PyWavelets==1.1.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 73)) (1.1.1) Requirement already satisfied: PyYAML==5.3.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 74)) (5.3.1) Requirement already satisfied: raven==6.10.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 75)) (6.10.0) Requirement already satisfied: requests==2.24.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 76)) (2.24.0) Requirement already satisfied: requests-oauthlib==1.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 77)) (1.3.0) Requirement already satisfied: requirements-parser==0.2.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 78)) (0.2.0) Requirement already satisfied: rsa==4.6 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 79)) (4.6) Requirement already satisfied: scikit-image==0.17.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 80)) (0.17.2) Requirement already satisfied: scikit-learn==0.23.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 81)) (0.23.2) Requirement already satisfied: scipy==1.5.4 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 82)) (1.5.4) Requirement already satisfied: seaborn==0.11.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 83)) (0.11.0) Requirement already satisfied: six==1.15.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 84)) (1.15.0) Requirement already satisfied: SQLAlchemy==1.3.20 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 85)) (1.3.20) Requirement already satisfied: tensorboard==2.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 86)) (2.3.0) Requirement already satisfied: tensorboard-plugin-wit==1.7.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 87)) (1.7.0) Requirement already satisfied: tensorflow==1.5.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 88)) (1.5.0) Requirement already satisfied: tensorflow-estimator==1.15.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 89)) (1.15.1) Requirement already satisfied: tensorflow-tensorboard==1.5.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 90)) (1.5.1) Requirement already satisfied: termcolor==1.1.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 91)) (1.1.0) Requirement already satisfied: threadpoolctl==2.1.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 92)) (2.1.0) Requirement already satisfied: tifffile==2020.9.3 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 93)) (2020.9.3) Requirement already satisfied: toml==0.10.2 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 94)) (0.10.2) Requirement already satisfied: torch==1.5.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 101)) (1.5.0) Requirement already satisfied: torchvision==0.6.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 103)) (0.6.0) Requirement already satisfied: tqdm==4.51.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 104)) (4.51.0) Requirement already satisfied: transforms3d==0.3.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 105)) (0.3.1) Requirement already satisfied: urllib3==1.25.11 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 106)) (1.25.11) Requirement already satisfied: Werkzeug==1.0.1 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 107)) (1.0.1) Requirement already satisfied: xlwt==1.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 108)) (1.3.0) Requirement already satisfied: zipp==3.4.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 109)) (3.4.0) Requirement already satisfied: setuptools>=40.3.0 in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from google-auth==1.23.0->-r requirements-freeze.txt (line 24)) (50.3.2) Requirement already satisfied: wheel>=0.26; python_version >= "3" in /Users/macpronirims/.pyenv/versions/3.6.9/lib/python3.6/site-packages (from tensorboard==2.3.0->-r requirements-freeze.txt (line 86)) (0.35.1) Obtaining file:///Users/macpronirims/sct_5.0.0 Installing collected packages: spinalcordtoolbox Running setup.py develop for spinalcordtoolbox Successfully installed spinalcordtoolbox Creating launchers for Python scripts... cp: /Users/macpronirims/sct_5.0.0/python/envs/venv_sct/bin/*sct*: No such file or directory Problem creating launchers! Installation failed! Please copy the historic of this Terminal (starting with the command install_sct) and paste it in a new created topic on SCT's forum: --> http://forum.spinalcordmri.org/c/sct