(sct36) liuyan@zyy-mr:~/qzf/sct5.4$ ./install_sct


*******************************
* Welcome to SCT installation *
*******************************



Checking OS type and version...

Linux zyy-mr 5.4.0-100-generic #113~18.04.1-Ubuntu SMP Mon Feb 7 15:02:59 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux

Checking requirements...


OK!


SCT version ......... 5.4
Installation type ... package
Operating system .... linux (unknown)
Shell config ........ /home/liuyan/.bashrc

To improve user experience and fix bugs, the SCT development team is using a
report system to automatically receive crash reports and errors from users.
These reports are anonymous.

Do you agree to help us improve SCT? [y]es/[n]o: y

--> Crash reports will be sent to the SCT development team. Thank you!


SCT will be installed here: [/home/liuyan/sct_5.4]



Do you agree? [y]es/[n]o: y

Do you want to add the sct_* scripts to your PATH environment? [y]es/[n]o: y

Copying source files from /home/liuyan/qzf/sct5.4 to /home/liuyan/sct_5.4

....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
Installing conda...


rm -rf /home/liuyan/sct_5.4/python


mkdir -p /home/liuyan/sct_5.4/python


wget -nv -O /tmp/tmp.aIybqizpKk/miniconda.sh https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh

2022-03-11 21:07:54 URL:https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh [75660608/75660608] -> "/tmp/tmp.aIybqizpKk/miniconda.sh" [1]

bash /tmp/tmp.aIybqizpKk/miniconda.sh -p /home/liuyan/sct_5.4/python -b -f

PREFIX=/home/liuyan/sct_5.4/python
Unpacking payload ...
Collecting package metadata (current_repodata.json): done
Solving environment: done

## Package Plan ##

  environment location: /home/liuyan/sct_5.4/python

  added / updated specs:
    - _libgcc_mutex==0.1=main
    - _openmp_mutex==4.5=1_gnu
    - brotlipy==0.7.0=py39h27cfd23_1003
    - ca-certificates==2021.10.26=h06a4308_2
    - certifi==2021.10.8=py39h06a4308_2
    - cffi==1.15.0=py39hd667e15_1
    - charset-normalizer==2.0.4=pyhd3eb1b0_0
    - conda-content-trust==0.1.1=pyhd3eb1b0_0
    - conda-package-handling==1.7.3=py39h27cfd23_1
    - conda==4.11.0=py39h06a4308_0
    - cryptography==36.0.0=py39h9ce1e76_0
    - idna==3.3=pyhd3eb1b0_0
    - ld_impl_linux-64==2.35.1=h7274673_9
    - libffi==3.3=he6710b0_2
    - libgcc-ng==9.3.0=h5101ec6_17
    - libgomp==9.3.0=h5101ec6_17
    - libstdcxx-ng==9.3.0=hd4cf53a_17
    - ncurses==6.3=h7f8727e_2
    - openssl==1.1.1m=h7f8727e_0
    - pip==21.2.4=py39h06a4308_0
    - pycosat==0.6.3=py39h27cfd23_0
    - pycparser==2.21=pyhd3eb1b0_0
    - pyopenssl==21.0.0=pyhd3eb1b0_1
    - pysocks==1.7.1=py39h06a4308_0
    - python==3.9.7=h12debd9_1
    - readline==8.1.2=h7f8727e_1
    - requests==2.27.1=pyhd3eb1b0_0
    - ruamel_yaml==0.15.100=py39h27cfd23_0
    - setuptools==58.0.4=py39h06a4308_0
    - six==1.16.0=pyhd3eb1b0_0
    - sqlite==3.37.0=hc218d9a_0
    - tk==8.6.11=h1ccaba5_0
    - tqdm==4.62.3=pyhd3eb1b0_1
    - tzdata==2021e=hda174b7_0
    - urllib3==1.26.7=pyhd3eb1b0_0
    - wheel==0.37.1=pyhd3eb1b0_0
    - xz==5.2.5=h7b6447c_0
    - yaml==0.2.5=h7b6447c_0
    - zlib==1.2.11=h7f8727e_4


The following NEW packages will be INSTALLED:

  _libgcc_mutex      pkgs/main/linux-64::_libgcc_mutex-0.1-main
  _openmp_mutex      pkgs/main/linux-64::_openmp_mutex-4.5-1_gnu
  brotlipy           pkgs/main/linux-64::brotlipy-0.7.0-py39h27cfd23_1003
  ca-certificates    pkgs/main/linux-64::ca-certificates-2021.10.26-h06a4308_2
  certifi            pkgs/main/linux-64::certifi-2021.10.8-py39h06a4308_2
  cffi               pkgs/main/linux-64::cffi-1.15.0-py39hd667e15_1
  charset-normalizer pkgs/main/noarch::charset-normalizer-2.0.4-pyhd3eb1b0_0
  conda              pkgs/main/linux-64::conda-4.11.0-py39h06a4308_0
  conda-content-tru~ pkgs/main/noarch::conda-content-trust-0.1.1-pyhd3eb1b0_0
  conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.7.3-py39h27cfd23_1
  cryptography       pkgs/main/linux-64::cryptography-36.0.0-py39h9ce1e76_0
  idna               pkgs/main/noarch::idna-3.3-pyhd3eb1b0_0
  ld_impl_linux-64   pkgs/main/linux-64::ld_impl_linux-64-2.35.1-h7274673_9
  libffi             pkgs/main/linux-64::libffi-3.3-he6710b0_2
  libgcc-ng          pkgs/main/linux-64::libgcc-ng-9.3.0-h5101ec6_17
  libgomp            pkgs/main/linux-64::libgomp-9.3.0-h5101ec6_17
  libstdcxx-ng       pkgs/main/linux-64::libstdcxx-ng-9.3.0-hd4cf53a_17
  ncurses            pkgs/main/linux-64::ncurses-6.3-h7f8727e_2
  openssl            pkgs/main/linux-64::openssl-1.1.1m-h7f8727e_0
  pip                pkgs/main/linux-64::pip-21.2.4-py39h06a4308_0
  pycosat            pkgs/main/linux-64::pycosat-0.6.3-py39h27cfd23_0
  pycparser          pkgs/main/noarch::pycparser-2.21-pyhd3eb1b0_0
  pyopenssl          pkgs/main/noarch::pyopenssl-21.0.0-pyhd3eb1b0_1
  pysocks            pkgs/main/linux-64::pysocks-1.7.1-py39h06a4308_0
  python             pkgs/main/linux-64::python-3.9.7-h12debd9_1
  readline           pkgs/main/linux-64::readline-8.1.2-h7f8727e_1
  requests           pkgs/main/noarch::requests-2.27.1-pyhd3eb1b0_0
  ruamel_yaml        pkgs/main/linux-64::ruamel_yaml-0.15.100-py39h27cfd23_0
  setuptools         pkgs/main/linux-64::setuptools-58.0.4-py39h06a4308_0
  six                pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_0
  sqlite             pkgs/main/linux-64::sqlite-3.37.0-hc218d9a_0
  tk                 pkgs/main/linux-64::tk-8.6.11-h1ccaba5_0
  tqdm               pkgs/main/noarch::tqdm-4.62.3-pyhd3eb1b0_1
  tzdata             pkgs/main/noarch::tzdata-2021e-hda174b7_0
  urllib3            pkgs/main/noarch::urllib3-1.26.7-pyhd3eb1b0_0
  wheel              pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0
  xz                 pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
  yaml               pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
  zlib               pkgs/main/linux-64::zlib-1.2.11-h7f8727e_4


Preparing transaction: done
Executing transaction: done
installation finished.
Collecting package metadata (current_repodata.json): done
Solving environment: -
Warning: >10 possible package resolutions (only showing differing packages):
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3, https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0, https://mirrors.ustc.edu.cn/anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  ... and othedone

## Package Plan ##

  environment location: /home/liuyan/sct_5.4/python/envs/venv_sct

  added / updated specs:
    - python=3.6


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _libgcc_mutex-0.1          |      conda_forge           3 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    _openmp_mutex-4.5          |            1_gnu          22 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    ca-certificates-2021.10.8  |       ha878542_0         139 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    certifi-2016.9.26          |           py36_0         217 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    ld_impl_linux-64-2.36.1    |       hea4e1c9_2         667 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    libffi-3.4.2               |       h7f98852_5          57 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    libgcc-ng-11.2.0           |      h1d223b6_13         906 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    libgomp-11.2.0             |      h1d223b6_13         428 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    libnsl-2.0.0               |       h7f98852_0          31 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    libstdcxx-ng-11.2.0        |      he4da1e4_13         4.2 MB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    libzlib-1.2.11             |    h36c2ea0_1013          59 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    ncurses-6.3                |       h9c3ff4c_0        1012 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    openssl-1.1.1l             |       h7f98852_0         2.1 MB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    pip-20.0.2                 |           py36_1         1.9 MB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    python-3.6.15              |hb7a2778_0_cpython        38.4 MB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    python_abi-3.6             |          2_cp36m           4 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    readline-8.1               |       h46c0cb4_0         295 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    setuptools-49.6.0          |   py36h5fab9bb_3         936 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    sqlite-3.37.0              |       h9cd32fc_0         1.5 MB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    tk-8.6.12                  |       h27826a3_0         3.3 MB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    wheel-0.37.1               |     pyhd8ed1ab_0          31 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    xz-5.2.5                   |       h516909a_1         343 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    zlib-1.2.11                |    h36c2ea0_1013          86 KB  https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge
    ------------------------------------------------------------
                                           Total:        56.5 MB

The following NEW packages will be INSTALLED:

  _libgcc_mutex      anaconda/cloud/conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
  _openmp_mutex      anaconda/cloud/conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
  ca-certificates    anaconda/cloud/conda-forge/linux-64::ca-certificates-2021.10.8-ha878542_0
  certifi            anaconda/cloud/conda-forge/linux-64::certifi-2016.9.26-py36_0
  ld_impl_linux-64   anaconda/cloud/conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
  libffi             anaconda/cloud/conda-forge/linux-64::libffi-3.4.2-h7f98852_5
  libgcc-ng          anaconda/cloud/conda-forge/linux-64::libgcc-ng-11.2.0-h1d223b6_13
  libgomp            anaconda/cloud/conda-forge/linux-64::libgomp-11.2.0-h1d223b6_13
  libnsl             anaconda/cloud/conda-forge/linux-64::libnsl-2.0.0-h7f98852_0
  libstdcxx-ng       anaconda/cloud/conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_13
  libzlib            anaconda/cloud/conda-forge/linux-64::libzlib-1.2.11-h36c2ea0_1013
  ncurses            anaconda/cloud/conda-forge/linux-64::ncurses-6.3-h9c3ff4c_0
  openssl            anaconda/cloud/conda-forge/linux-64::openssl-1.1.1l-h7f98852_0
  pip                anaconda/cloud/conda-forge/linux-64::pip-20.0.2-py36_1
  python             anaconda/cloud/conda-forge/linux-64::python-3.6.15-hb7a2778_0_cpython
  python_abi         anaconda/cloud/conda-forge/linux-64::python_abi-3.6-2_cp36m
  readline           anaconda/cloud/conda-forge/linux-64::readline-8.1-h46c0cb4_0
  setuptools         anaconda/cloud/conda-forge/linux-64::setuptools-49.6.0-py36h5fab9bb_3
  sqlite             anaconda/cloud/conda-forge/linux-64::sqlite-3.37.0-h9cd32fc_0
  tk                 anaconda/cloud/conda-forge/linux-64::tk-8.6.12-h27826a3_0
  wheel              anaconda/cloud/conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  xz                 anaconda/cloud/conda-forge/linux-64::xz-5.2.5-h516909a_1
  zlib               anaconda/cloud/conda-forge/linux-64::zlib-1.2.11-h36c2ea0_1013



Downloading and Extracting Packages
ld_impl_linux-64-2.3 | 667 KB    | ################################################################################### | 100%
libstdcxx-ng-11.2.0  | 4.2 MB    | ################################################################################### | 100%
sqlite-3.37.0        | 1.5 MB    | ################################################################################### | 100%
wheel-0.37.1         | 31 KB     | ################################################################################### | 100%
libffi-3.4.2         | 57 KB     | ################################################################################### | 100%
xz-5.2.5             | 343 KB    | ################################################################################### | 100%
setuptools-49.6.0    | 936 KB    | ################################################################################### | 100%
pip-20.0.2           | 1.9 MB    | ################################################################################### | 100%
libnsl-2.0.0         | 31 KB     | ################################################################################### | 100%
libzlib-1.2.11       | 59 KB     | ################################################################################### | 100%
certifi-2016.9.26    | 217 KB    | ################################################################################### | 100%
ncurses-6.3          | 1012 KB   | ################################################################################### | 100%
python_abi-3.6       | 4 KB      | ################################################################################### | 100%
tk-8.6.12            | 3.3 MB    | ################################################################################### | 100%
python-3.6.15        | 38.4 MB   | ################################################################################### | 100%
_openmp_mutex-4.5    | 22 KB     | ################################################################################### | 100%
ca-certificates-2021 | 139 KB    | ################################################################################### | 100%
libgcc-ng-11.2.0     | 906 KB    | ################################################################################### | 100%
libgomp-11.2.0       | 428 KB    | ################################################################################### | 100%
zlib-1.2.11          | 86 KB     | ################################################################################### | 100%
_libgcc_mutex-0.1    | 3 KB      | ################################################################################### | 100%
readline-8.1         | 295 KB    | ################################################################################### | 100%
openssl-1.1.1l       | 2.1 MB    | ################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
#     $ conda activate venv_sct
#
# To deactivate an active environment, use
#
#     $ conda deactivate


Installing Python dependencies...


Using requirements-freeze.txt (release installation)

Defaulting to user installation because normal site-packages is not writeable
Looking in links: https://download.pytorch.org/whl/cpu/torch_stable.html
Ignoring torch: markers 'sys_platform == "darwin"' don't match your environment
Ignoring torchvision: markers 'sys_platform == "darwin"' don't match your environment
Collecting absl-py==0.14.0
  Downloading absl_py-0.14.0-py3-none-any.whl (131 kB)
     |████████████████████████████████| 131 kB 221 kB/s
Collecting aiocontextvars==0.2.2
  Downloading aiocontextvars-0.2.2-py2.py3-none-any.whl (4.9 kB)
Collecting attrs==21.2.0
  Downloading attrs-21.2.0-py2.py3-none-any.whl (53 kB)
     |████████████████████████████████| 53 kB 47 kB/s
Collecting bids-validator==1.8.4
  Downloading bids_validator-1.8.4-py2.py3-none-any.whl (19 kB)
Collecting bleach==1.5.0
  Downloading bleach-1.5.0-py2.py3-none-any.whl (17 kB)
Collecting cachetools==4.2.2
  Downloading cachetools-4.2.2-py3-none-any.whl (11 kB)
Collecting certifi==2021.5.30
  Downloading certifi-2021.5.30-py2.py3-none-any.whl (145 kB)
     |████████████████████████████████| 145 kB 353 kB/s
Collecting cffi==1.14.6
  Downloading cffi-1.14.6-cp36-cp36m-manylinux1_x86_64.whl (401 kB)
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Collecting charset-normalizer==2.0.6
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Collecting click==8.0.1
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Collecting colored==1.4.2
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Collecting contextvars==2.4
  Downloading contextvars-2.4.tar.gz (9.6 kB)
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Collecting coverage==5.5
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Collecting cryptography==3.4.8
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Collecting csv-diff==1.1
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Requirement already satisfied: cycler==0.10.0 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 16)) (0.10.0)
Requirement already satisfied: dataclasses==0.8 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 17)) (0.8)
Requirement already satisfied: decorator==4.4.2 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 18)) (4.4.2)
Collecting dictdiffer==0.9.0
  Downloading dictdiffer-0.9.0-py2.py3-none-any.whl (16 kB)
Collecting dipy==1.4.1
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Collecting docopt==0.6.2
  Using cached docopt-0.6.2.tar.gz (25 kB)
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Collecting future==0.18.2
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Collecting futures==3.1.1
  Downloading futures-3.1.1-py3-none-any.whl (2.8 kB)
Collecting google-auth==1.35.0
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Collecting google-auth-oauthlib==0.4.6
  Downloading google_auth_oauthlib-0.4.6-py2.py3-none-any.whl (18 kB)
Collecting grpcio==1.40.0
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Requirement already satisfied: h5py==2.10.0 in /usr/local/lib/python3.6/dist-packages (from -r requirements-freeze.txt (line 27)) (2.10.0)
Collecting html5lib==0.9999999
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Collecting idna==3.2
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Requirement already satisfied: imageio==2.9.0 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 30)) (2.9.0)
Collecting immutables==0.16
  Downloading immutables-0.16-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.whl (103 kB)
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Collecting importlib-metadata==4.8.1
  Downloading importlib_metadata-4.8.1-py3-none-any.whl (17 kB)
Requirement already satisfied: iniconfig==1.1.1 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 33)) (1.1.1)
Collecting ivadomed==2.8.0
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Collecting joblib==1.0.1
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Collecting Keras==2.1.5
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Requirement already satisfied: kiwisolver==1.3.1 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 37)) (1.3.1)
Collecting loguru==0.5.3
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Collecting Markdown==3.3.4
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Requirement already satisfied: matplotlib==3.3.4 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 40)) (3.3.4)
Collecting mock==4.0.3
  Downloading mock-4.0.3-py3-none-any.whl (28 kB)
Requirement already satisfied: networkx==2.5.1 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 42)) (2.5.1)
Collecting nibabel==3.2.1
  Using cached nibabel-3.2.1-py3-none-any.whl (3.3 MB)
Collecting num2words==0.5.10
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Collecting numpy==1.19.5
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Collecting oauthlib==3.1.1
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Collecting onnxruntime==1.4.0
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Collecting packaging==21.0
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Collecting pandas==1.1.5
  Downloading pandas-1.1.5-cp36-cp36m-manylinux1_x86_64.whl (9.5 MB)
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Collecting patsy==0.5.2
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Collecting Pillow==8.3.2
  Downloading Pillow-8.3.2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (3.0 MB)
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Requirement already satisfied: pluggy==1.0.0 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 52)) (1.0.0)
Collecting protobuf==3.18.0
  Downloading protobuf-3.18.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.1 MB)
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Collecting psutil==5.8.0
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Collecting py==1.10.0
  Downloading py-1.10.0-py2.py3-none-any.whl (97 kB)
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Collecting pyasn1==0.4.8
  Using cached pyasn1-0.4.8-py2.py3-none-any.whl (77 kB)
Collecting pyasn1-modules==0.2.8
  Using cached pyasn1_modules-0.2.8-py2.py3-none-any.whl (155 kB)
Collecting pybids==0.13.2
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Collecting pycparser==2.20
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Collecting pyOpenSSL==20.0.1
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Requirement already satisfied: pyparsing==2.4.7 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 61)) (2.4.7)
Collecting PyQt5==5.11.3
  Downloading PyQt5-5.11.3-5.11.2-cp35.cp36.cp37.cp38-abi3-manylinux1_x86_64.whl (117.8 MB)
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Collecting PyQt5-sip==4.19.19
  Downloading PyQt5_sip-4.19.19-cp36-cp36m-manylinux1_x86_64.whl (67 kB)
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Requirement already satisfied: pytest==6.2.5 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 64)) (6.2.5)
Collecting pytest-console-scripts==1.2.0
  Downloading pytest-console-scripts-1.2.0.tar.gz (13 kB)
  Preparing metadata (setup.py) ... done
Collecting pytest-cov==2.12.1
  Downloading pytest_cov-2.12.1-py2.py3-none-any.whl (20 kB)
Requirement already satisfied: python-dateutil==2.8.2 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 67)) (2.8.2)
Collecting pytz==2021.1
  Using cached pytz-2021.1-py2.py3-none-any.whl (510 kB)
Requirement already satisfied: PyWavelets==1.1.1 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 69)) (1.1.1)
Collecting PyYAML==5.4.1
  Downloading PyYAML-5.4.1-cp36-cp36m-manylinux1_x86_64.whl (640 kB)
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Collecting raven==6.10.0
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Collecting requests==2.26.0
  Downloading requests-2.26.0-py2.py3-none-any.whl (62 kB)
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Collecting requests-oauthlib==1.3.0
  Using cached requests_oauthlib-1.3.0-py2.py3-none-any.whl (23 kB)
Collecting requirements-parser==0.2.0
  Downloading requirements-parser-0.2.0.tar.gz (6.3 kB)
  Preparing metadata (setup.py) ... done
Collecting rsa==4.7.2
  Downloading rsa-4.7.2-py3-none-any.whl (34 kB)
Collecting scikit-image==0.17.2
  Using cached scikit_image-0.17.2-cp36-cp36m-manylinux1_x86_64.whl (12.4 MB)
Collecting scikit-learn==0.24.2
  Downloading scikit_learn-0.24.2-cp36-cp36m-manylinux2010_x86_64.whl (22.2 MB)
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Collecting scipy==1.5.4
  Downloading scipy-1.5.4-cp36-cp36m-manylinux1_x86_64.whl (25.9 MB)
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Collecting seaborn==0.11.2
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Requirement already satisfied: six==1.16.0 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 80)) (1.16.0)
Collecting SQLAlchemy==1.3.24
  Downloading SQLAlchemy-1.3.24-cp36-cp36m-manylinux2010_x86_64.whl (1.3 MB)
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Collecting tensorboard==2.6.0
  Downloading tensorboard-2.6.0-py3-none-any.whl (5.6 MB)
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Collecting tensorboard-data-server==0.6.1
  Downloading tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl (4.9 MB)
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Collecting tensorboard-plugin-wit==1.8.0
  Downloading tensorboard_plugin_wit-1.8.0-py3-none-any.whl (781 kB)
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Collecting tensorflow==1.5.0
  Downloading tensorflow-1.5.0-cp36-cp36m-manylinux1_x86_64.whl (44.4 MB)
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Collecting threadpoolctl==2.2.0
  Downloading threadpoolctl-2.2.0-py3-none-any.whl (12 kB)
Requirement already satisfied: tifffile==2020.9.3 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 87)) (2020.9.3)
Requirement already satisfied: toml==0.10.2 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 88)) (0.10.2)
Requirement already satisfied: tqdm==4.62.3 in /home/liuyan/.local/lib/python3.6/site-packages (from -r requirements-freeze.txt (line 89)) (4.62.3)
Collecting transforms3d==0.3.1
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  Preparing metadata (setup.py) ... done
Collecting typing-extensions==3.10.0.2
  Downloading typing_extensions-3.10.0.2-py3-none-any.whl (26 kB)
Collecting urllib3==1.26.7
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Collecting Werkzeug==2.0.1
  Downloading Werkzeug-2.0.1-py3-none-any.whl (288 kB)
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Collecting wquantiles==0.6
  Downloading wquantiles-0.6-py3-none-any.whl (3.3 kB)
Collecting xlwt==1.3.0
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Collecting zipp==3.5.0
  Downloading zipp-3.5.0-py3-none-any.whl (5.7 kB)
Collecting torch==1.5.0+cpu
  Downloading https://download.pytorch.org/whl/cpu/torch-1.5.0%2Bcpu-cp36-cp36m-linux_x86_64.whl (127.3 MB)
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Collecting torchvision==0.6.0+cpu
  Downloading https://download.pytorch.org/whl/cpu/torchvision-0.6.0%2Bcpu-cp36-cp36m-linux_x86_64.whl (5.7 MB)
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Requirement already satisfied: setuptools>=40.3.0 in /usr/local/lib/python3.6/dist-packages (from google-auth==1.35.0->-r requirements-freeze.txt (line 24)) (49.2.0)
Requirement already satisfied: wheel>=0.26 in /usr/local/lib/python3.6/dist-packages (from tensorboard==2.6.0->-r requirements-freeze.txt (line 82)) (0.34.2)
Collecting tensorflow-tensorboard<1.6.0,>=1.5.0
  Downloading tensorflow_tensorboard-1.5.1-py3-none-any.whl (3.0 MB)
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WARNING: The candidate selected for download or install is a yanked version: 'futures' candidate (version 3.1.1 at https://files.pythonhosted.org/packages/05/80/f41cca0ea1ff69bce7e7a7d76182b47bb4e1a494380a532af3e8ee70b9ec/futures-3.1.1-py3-none-any.whl#sha256=3a44f286998ae64f0cc083682fcfec16c406134a81a589a5de445d7bb7c2751b (from https://pypi.org/simple/futures/))
Reason for being yanked: Does not declare incompatibility with Python 3
WARNING: The candidate selected for download or install is a yanked version: 'protobuf' candidate (version 3.18.0 at https://files.pythonhosted.org/packages/16/78/6f8fbcb218ff4cb66da0731c373c70901d89382ed722240cce1717de5c29/protobuf-3.18.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl#sha256=f589346b5b3f702c1d30e2343c9897e6c35e7bd495c10a0e17d11ecb5ee5bd06 (from https://pypi.org/simple/protobuf/))
Reason for being yanked: This version claims to support Python 2 but does not
Building wheels for collected packages: colored, contextvars, docopt, future, html5lib, pytest-console-scripts, requirements-parser, transforms3d
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  Created wheel for colored: filename=colored-1.4.2-py3-none-any.whl size=14002 sha256=d1db2834dc675b9adf31744ec0cd5565c13f6881833b09e80b79b450c5e64f2c
  Stored in directory: /home/liuyan/.cache/pip/wheels/b7/be/ae/a98f7701429c3cfcebf4d2b537e48a1571549a4d8b55463a01
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  Created wheel for contextvars: filename=contextvars-2.4-py3-none-any.whl size=7664 sha256=6ab7d52a0916ddd6083ab0736c4e705b0bdedb5012ad5d54fc902c40d85474a0
  Stored in directory: /home/liuyan/.cache/pip/wheels/41/11/53/911724983aa48deb94792432e14e518447212dd6c5477d49d3
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  Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13704 sha256=8b99565092a707b4414de01c97e54e30795b533b1e30a54d64b5783984337796
  Stored in directory: /home/liuyan/.cache/pip/wheels/3f/2a/fa/4d7a888e69774d5e6e855d190a8a51b357d77cc05eb1c097c9
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  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=fa509d3f6609eba1566123df475f55a38b6072f179dbab2c81c06944235d949a
  Stored in directory: /home/liuyan/.cache/pip/wheels/6e/9c/ed/4499c9865ac1002697793e0ae05ba6be33553d098f3347fb94
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  Created wheel for html5lib: filename=html5lib-0.9999999-py3-none-any.whl size=107220 sha256=3b6a031fe3838986ee04593b8f1e2bef6adfdf1b4f89303d6a3d2e921500a166
  Stored in directory: /home/liuyan/.cache/pip/wheels/90/1c/cb/a87fd097ff74648ecc468a703001f6c7c86d8a71d459e65c98
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  Created wheel for pytest-console-scripts: filename=pytest_console_scripts-1.2.0-py3-none-any.whl size=9105 sha256=10edff6e0e9996ce44e92ec9803ce3c030405bb95db1ccde3b3a3047c16b00b7
  Stored in directory: /home/liuyan/.cache/pip/wheels/b4/5e/10/1169e05aa99eb21b2d66be1fd0f80c7305f1ec9492cac35eb9
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  Created wheel for requirements-parser: filename=requirements_parser-0.2.0-py3-none-any.whl size=7655 sha256=02ace447f3367e82f1835a1c88b7f28c9d9993b6ef839772f6597b0de4ec5e96
  Stored in directory: /home/liuyan/.cache/pip/wheels/80/af/bd/32c202b632c3e9a1b482b33d37f5efd128137891a08f3c3bae
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  Created wheel for transforms3d: filename=transforms3d-0.3.1-py3-none-any.whl size=59372 sha256=45cdff62dee5a1e27ed5e00c75a639567529abdcdc712772798a4f7f300e3581
  Stored in directory: /home/liuyan/.cache/pip/wheels/be/7a/eb/465e9bb085af816c4d504821d542cc0059cc3433f6e8edea3c
Successfully built colored contextvars docopt future html5lib pytest-console-scripts requirements-parser transforms3d
Installing collected packages: urllib3, typing-extensions, pyasn1, idna, charset-normalizer, certifi, zipp, rsa, requests, pyasn1-modules, oauthlib, immutables, cachetools, requests-oauthlib, pytz, pycparser, Pillow, packaging, numpy, importlib-metadata, html5lib, google-auth, docopt, contextvars, Werkzeug, threadpoolctl, tensorboard-plugin-wit, tensorboard-data-server, SQLAlchemy, scipy, py, protobuf, patsy, pandas, num2words, nibabel, Markdown, joblib, grpcio, google-auth-oauthlib, future, dictdiffer, click, cffi, bleach, bids-validator, attrs, aiocontextvars, absl-py, torch, tensorflow-tensorboard, tensorboard, seaborn, scikit-learn, scikit-image, PyYAML, PyQt5-sip, pybids, onnxruntime, mock, loguru, csv-diff, cryptography, coverage, xlwt, wquantiles, transforms3d, torchvision, tensorflow, requirements-parser, raven, pytest-cov, pytest-console-scripts, PyQt5, pyOpenSSL, psutil, Keras, ivadomed, futures, dipy, colored
  Attempting uninstall: typing-extensions
    Found existing installation: typing-extensions 4.0.1
    Uninstalling typing-extensions-4.0.1:
      Successfully uninstalled typing-extensions-4.0.1
  Attempting uninstall: zipp
    Found existing installation: zipp 3.6.0
    Uninstalling zipp-3.6.0:
      Successfully uninstalled zipp-3.6.0
  Attempting uninstall: Pillow
    Found existing installation: Pillow 8.4.0
    Uninstalling Pillow-8.4.0:
      Successfully uninstalled Pillow-8.4.0
  Attempting uninstall: packaging
    Found existing installation: packaging 21.3
    Uninstalling packaging-21.3:
      Successfully uninstalled packaging-21.3
  Attempting uninstall: importlib-metadata
    Found existing installation: importlib-metadata 4.8.3
    Uninstalling importlib-metadata-4.8.3:
      Successfully uninstalled importlib-metadata-4.8.3
  Attempting uninstall: py
    Found existing installation: py 1.11.0
    Uninstalling py-1.11.0:
      Successfully uninstalled py-1.11.0
  Attempting uninstall: click
    Found existing installation: click 8.0.3
    Uninstalling click-8.0.3:
      Successfully uninstalled click-8.0.3
  Attempting uninstall: attrs
    Found existing installation: attrs 21.4.0
    Uninstalling attrs-21.4.0:
      Successfully uninstalled attrs-21.4.0
  Attempting uninstall: scikit-image
    Found existing installation: scikit-image 0.15.0
    Uninstalling scikit-image-0.15.0:
      Successfully uninstalled scikit-image-0.15.0
  Attempting uninstall: PyYAML
    Found existing installation: PyYAML 6.0
    Uninstalling PyYAML-6.0:
      Successfully uninstalled PyYAML-6.0
  Attempting uninstall: coverage
    Found existing installation: coverage 6.2
    Uninstalling coverage-6.2:
      Successfully uninstalled coverage-6.2
  Attempting uninstall: torchvision
    Found existing installation: torchvision 0.8.2+cu110
    Uninstalling torchvision-0.8.2+cu110:
      Successfully uninstalled torchvision-0.8.2+cu110
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
torchaudio 0.7.2 requires torch==1.7.1, but you have torch 1.5.0+cpu which is incompatible.
flake8 4.0.1 requires importlib-metadata<4.3; python_version < "3.8", but you have importlib-metadata 4.8.1 which is incompatible.
virtualenv 20.0.28 requires importlib-metadata<2,>=0.12; python_version < "3.8", but you have importlib-metadata 4.8.1 which is incompatible.
Successfully installed Keras-2.1.5 Markdown-3.3.4 Pillow-8.3.2 PyQt5-5.11.3 PyQt5-sip-4.19.19 PyYAML-5.4.1 SQLAlchemy-1.3.24 Werkzeug-2.0.1 absl-py-0.14.0 aiocontextvars-0.2.2 attrs-21.2.0 bids-validator-1.8.4 bleach-1.5.0 cachetools-4.2.2 certifi-2021.5.30 cffi-1.14.6 charset-normalizer-2.0.6 click-8.0.1 colored-1.4.2 contextvars-2.4 coverage-5.5 cryptography-3.4.8 csv-diff-1.1 dictdiffer-0.9.0 dipy-1.4.1 docopt-0.6.2 future-0.18.2 futures-3.1.1 google-auth-1.35.0 google-auth-oauthlib-0.4.6 grpcio-1.40.0 html5lib-0.9999999 idna-3.2 immutables-0.16 importlib-metadata-4.8.1 ivadomed-2.8.0 joblib-1.0.1 loguru-0.5.3 mock-4.0.3 nibabel-3.2.1 num2words-0.5.10 numpy-1.19.5 oauthlib-3.1.1 onnxruntime-1.4.0 packaging-21.0 pandas-1.1.5 patsy-0.5.2 protobuf-3.18.0 psutil-5.8.0 py-1.10.0 pyOpenSSL-20.0.1 pyasn1-0.4.8 pyasn1-modules-0.2.8 pybids-0.13.2 pycparser-2.20 pytest-console-scripts-1.2.0 pytest-cov-2.12.1 pytz-2021.1 raven-6.10.0 requests-2.26.0 requests-oauthlib-1.3.0 requirements-parser-0.2.0 rsa-4.7.2 scikit-image-0.17.2 scikit-learn-0.24.2 scipy-1.5.4 seaborn-0.11.2 tensorboard-2.6.0 tensorboard-data-server-0.6.1 tensorboard-plugin-wit-1.8.0 tensorflow-1.5.0 tensorflow-tensorboard-1.5.1 threadpoolctl-2.2.0 torch-1.5.0+cpu torchvision-0.6.0+cpu transforms3d-0.3.1 typing-extensions-3.10.0.2 urllib3-1.26.7 wquantiles-0.6 xlwt-1.3.0 zipp-3.5.0
/usr/lib/python3/dist-packages/secretstorage/dhcrypto.py:15: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
/usr/lib/python3/dist-packages/secretstorage/util.py:19: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
Found existing installation: tensorflow-tensorboard 1.5.1
Uninstalling tensorflow-tensorboard-1.5.1:
  Successfully uninstalled tensorflow-tensorboard-1.5.1
/usr/lib/python3/dist-packages/secretstorage/dhcrypto.py:15: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
/usr/lib/python3/dist-packages/secretstorage/util.py:19: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
Found existing installation: tensorboard 2.6.0
Uninstalling tensorboard-2.6.0:
  Successfully uninstalled tensorboard-2.6.0
/usr/lib/python3/dist-packages/secretstorage/dhcrypto.py:15: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
/usr/lib/python3/dist-packages/secretstorage/util.py:19: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
Defaulting to user installation because normal site-packages is not writeable
Requirement already satisfied: tensorboard in /usr/local/lib/python3.6/dist-packages (1.14.0)
Requirement already satisfied: markdown>=2.6.8 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (3.3.4)
Requirement already satisfied: wheel>=0.26 in /usr/local/lib/python3.6/dist-packages (from tensorboard) (0.34.2)
Requirement already satisfied: werkzeug>=0.11.15 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (2.0.1)
Requirement already satisfied: setuptools>=41.0.0 in /usr/local/lib/python3.6/dist-packages (from tensorboard) (49.2.0)
Requirement already satisfied: absl-py>=0.4 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (0.14.0)
Requirement already satisfied: numpy>=1.12.0 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (1.19.5)
Requirement already satisfied: protobuf>=3.6.0 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (3.18.0)
Requirement already satisfied: grpcio>=1.6.3 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (1.40.0)
Requirement already satisfied: six>=1.10.0 in /home/liuyan/.local/lib/python3.6/site-packages (from tensorboard) (1.16.0)
Requirement already satisfied: importlib-metadata in /home/liuyan/.local/lib/python3.6/site-packages (from markdown>=2.6.8->tensorboard) (4.8.1)
Requirement already satisfied: dataclasses in /home/liuyan/.local/lib/python3.6/site-packages (from werkzeug>=0.11.15->tensorboard) (0.8)
Requirement already satisfied: zipp>=0.5 in /home/liuyan/.local/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard) (3.5.0)
Requirement already satisfied: typing-extensions>=3.6.4 in /home/liuyan/.local/lib/python3.6/site-packages (from importlib-metadata->markdown>=2.6.8->tensorboard) (3.10.0.2)

Installing spinalcordtoolbox...

/usr/lib/python3/dist-packages/secretstorage/dhcrypto.py:15: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
/usr/lib/python3/dist-packages/secretstorage/util.py:19: CryptographyDeprecationWarning: int_from_bytes is deprecated, use int.from_bytes instead
  from cryptography.utils import int_from_bytes
Defaulting to user installation because normal site-packages is not writeable
Obtaining file:///home/liuyan/sct_5.4
  Preparing metadata (setup.py) ... done
Installing collected packages: spinalcordtoolbox
  Running setup.py develop for spinalcordtoolbox
Successfully installed spinalcordtoolbox-5.4

Creating launchers for Python scripts...

./install_sct: line 662: no match: /home/liuyan/sct_5.4/python/envs/venv_sct/bin/*sct*

Installation failed!

Please copy the output of this Terminal (starting with the command install_sct) and upload it as a .txt attachment in a new topic on SCT's forum:

--> http://forum.spinalcordmri.org/c/sct