
[0;32m
*******************************
* Welcome to SCT installation *
*******************************
[0m


[0;32mChecking OS type and version...[0m

Darwin Enochs-MacBook-Pro.local 21.2.0 Darwin Kernel Version 21.2.0: Sun Nov 28 20:29:10 PST 2021; root:xnu-8019.61.5~1/RELEASE_ARM64_T8101 arm64
ProductVersion:	12.1

[0;32mChecking requirements...[0m


[0;32mOK![0m


SCT version ......... dev
Installation type ... in-place
Operating system .... osx (12.1)
Shell config ........ /Users/en_tetteh/.zshrc

[0;92mTo improve user experience and fix bugs, the SCT development team is using a
report system to automatically receive crash reports and errors from users.
These reports are anonymous.

Do you agree to help us improve SCT? [y]es/[n]o: [0m
[0;32m--> Crash reports will be sent to the SCT development team. Thank you![0m


[0;32mSCT will be installed here: [/Users/en_tetteh/NEUROPOLY/spinalcordtoolbox][0m


[0;92m
Do you agree? [y]es/[n]o: [0m
[0;92mDo you want to add the sct_* scripts to your PATH environment? [y]es/[n]o: [0m
[0;32mSkipping copy of source files (source and destination folders are the same)[0m


[0;34mrm -rf /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/python[0m


[0;34mmkdir -p /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/python[0m


[0;32mDownloading Miniconda...[0m


[0;34mcurl -sS -o /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/tmp.BGrOKtNT/miniconda.sh -L https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh[0m


[0;32mInstalling Miniconda...[0m


[0;34mbash /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/tmp.BGrOKtNT/miniconda.sh -p /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/python -b -f[0m

PREFIX=/Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/python
Unpacking payload ...
  0%|          | 0/34 [00:00<?, ?it/s]Extracting : libffi-3.3-hb1e8313_2.conda:   0%|          | 0/34 [00:00<?, ?it/s]Extracting : libffi-3.3-hb1e8313_2.conda:   3%|▎         | 1/34 [00:00<00:12,  2.61it/s]Extracting : ruamel_yaml-0.15.100-py39h9ed2024_0.conda:   3%|▎         | 1/34 [00:00<00:12,  2.61it/s]Extracting : wheel-0.36.2-pyhd3eb1b0_0.conda:   6%|▌         | 2/34 [00:00<00:12,  2.61it/s]          Extracting : libcxx-10.0.0-1.conda:   9%|▉         | 3/34 [00:00<00:11,  2.61it/s]          Extracting : libcxx-10.0.0-1.conda:  12%|█▏        | 4/34 [00:00<00:08,  3.43it/s]Extracting : pip-21.1.3-py39hecd8cb5_0.conda:  12%|█▏        | 4/34 [00:01<00:08,  3.43it/s]Extracting : pip-21.1.3-py39hecd8cb5_0.conda:  15%|█▍        | 5/34 [00:01<00:10,  2.80it/s]Extracting : six-1.16.0-pyhd3eb1b0_0.conda:  15%|█▍        | 5/34 [00:01<00:10,  2.80it/s]  Extracting : pysocks-1.7.1-py39hecd8cb5_0.conda:  18%|█▊        | 6/34 [00:01<00:09,  2.80it/s]Extracting : pyopenssl-20.0.1-pyhd3eb1b0_1.conda:  21%|██        | 7/34 [00:01<00:09,  2.80it/s]Extracting : chardet-4.0.0-py39hecd8cb5_1003.conda:  24%|██▎       | 8/34 [00:01<00:09,  2.80it/s]Extracting : openssl-1.1.1k-h9ed2024_0.conda:  26%|██▋       | 9/34 [00:01<00:08,  2.80it/s]      Extracting : zlib-1.2.11-h1de35cc_3.conda:  29%|██▉       | 10/34 [00:01<00:08,  2.80it/s]  Extracting : brotlipy-0.7.0-py39h9ed2024_1003.conda:  32%|███▏      | 11/34 [00:01<00:08,  2.80it/s]Extracting : certifi-2021.5.30-py39hecd8cb5_0.conda:  35%|███▌      | 12/34 [00:01<00:07,  2.80it/s]Extracting : pycosat-0.6.3-py39h9ed2024_0.conda:  38%|███▊      | 13/34 [00:01<00:07,  2.80it/s]    Extracting : sqlite-3.36.0-hce871da_0.conda:  41%|████      | 14/34 [00:01<00:07,  2.80it/s]    Extracting : requests-2.25.1-pyhd3eb1b0_0.conda:  44%|████▍     | 15/34 [00:01<00:06,  2.80it/s]Extracting : python-3.9.5-h88f2d9e_3.conda:  47%|████▋     | 16/34 [00:02<00:06,  2.80it/s]     Extracting : python-3.9.5-h88f2d9e_3.conda:  50%|█████     | 17/34 [00:02<00:04,  3.64it/s]Extracting : tzdata-2021a-h52ac0ba_0.conda:  50%|█████     | 17/34 [00:02<00:04,  3.64it/s]Extracting : pycparser-2.20-py_2.conda:  53%|█████▎    | 18/34 [00:02<00:04,  3.64it/s]    Extracting : urllib3-1.26.6-pyhd3eb1b0_1.conda:  56%|█████▌    | 19/34 [00:02<00:04,  3.64it/s]Extracting : conda-package-handling-1.7.3-py39h9ed2024_1.conda:  59%|█████▉    | 20/34 [00:02<00:03,  3.64it/s]Extracting : ca-certificates-2021.7.5-hecd8cb5_1.conda:  62%|██████▏   | 21/34 [00:02<00:03,  3.64it/s]        Extracting : setuptools-52.0.0-py39hecd8cb5_0.conda:  65%|██████▍   | 22/34 [00:02<00:03,  3.64it/s]   Extracting : cryptography-3.4.7-py39h2fd3fbb_0.conda:  68%|██████▊   | 23/34 [00:02<00:03,  3.64it/s]Extracting : python.app-3-py39h9ed2024_0.conda:  71%|███████   | 24/34 [00:02<00:02,  3.64it/s]      Extracting : tqdm-4.61.2-pyhd3eb1b0_1.conda:  74%|███████▎  | 25/34 [00:02<00:02,  3.64it/s]   Extracting : cffi-1.14.6-py39h2125817_0.conda:  76%|███████▋  | 26/34 [00:02<00:02,  3.64it/s]Extracting : tk-8.6.10-hb0a8c7a_0.conda:  79%|███████▉  | 27/34 [00:02<00:01,  3.64it/s]      Extracting : ncurses-6.2-h0a44026_1.conda:  82%|████████▏ | 28/34 [00:02<00:01,  3.64it/s]Extracting : xz-5.2.5-h1de35cc_0.conda:  85%|████████▌ | 29/34 [00:02<00:01,  3.64it/s]   Extracting : readline-8.1-h9ed2024_0.conda:  88%|████████▊ | 30/34 [00:02<00:01,  3.64it/s]Extracting : yaml-0.2.5-haf1e3a3_0.conda:  91%|█████████ | 31/34 [00:02<00:00,  3.64it/s]  Extracting : idna-2.10-pyhd3eb1b0_0.tar.bz2:  94%|█████████▍| 32/34 [00:02<00:00,  3.64it/s]Extracting : conda-4.10.3-py39hecd8cb5_0.tar.bz2:  97%|█████████▋| 33/34 [00:02<00:00,  3.64it/s]Extracting : conda-4.10.3-py39hecd8cb5_0.tar.bz2: 100%|██████████| 34/34 [00:02<00:00,  5.15it/s]                                                                                                 Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/python

  added / updated specs:
    - brotlipy==0.7.0=py39h9ed2024_1003
    - ca-certificates==2021.7.5=hecd8cb5_1
    - certifi==2021.5.30=py39hecd8cb5_0
    - cffi==1.14.6=py39h2125817_0
    - chardet==4.0.0=py39hecd8cb5_1003
    - conda-package-handling==1.7.3=py39h9ed2024_1
    - conda==4.10.3=py39hecd8cb5_0
    - cryptography==3.4.7=py39h2fd3fbb_0
    - idna==2.10=pyhd3eb1b0_0
    - libcxx==10.0.0=1
    - libffi==3.3=hb1e8313_2
    - ncurses==6.2=h0a44026_1
    - openssl==1.1.1k=h9ed2024_0
    - pip==21.1.3=py39hecd8cb5_0
    - pycosat==0.6.3=py39h9ed2024_0
    - pycparser==2.20=py_2
    - pyopenssl==20.0.1=pyhd3eb1b0_1
    - pysocks==1.7.1=py39hecd8cb5_0
    - python.app==3=py39h9ed2024_0
    - python==3.9.5=h88f2d9e_3
    - readline==8.1=h9ed2024_0
    - requests==2.25.1=pyhd3eb1b0_0
    - ruamel_yaml==0.15.100=py39h9ed2024_0
    - setuptools==52.0.0=py39hecd8cb5_0
    - six==1.16.0=pyhd3eb1b0_0
    - sqlite==3.36.0=hce871da_0
    - tk==8.6.10=hb0a8c7a_0
    - tqdm==4.61.2=pyhd3eb1b0_1
    - tzdata==2021a=h52ac0ba_0
    - urllib3==1.26.6=pyhd3eb1b0_1
    - wheel==0.36.2=pyhd3eb1b0_0
    - xz==5.2.5=h1de35cc_0
    - yaml==0.2.5=haf1e3a3_0
    - zlib==1.2.11=h1de35cc_3


The following NEW packages will be INSTALLED:

  brotlipy           pkgs/main/osx-64::brotlipy-0.7.0-py39h9ed2024_1003
  ca-certificates    pkgs/main/osx-64::ca-certificates-2021.7.5-hecd8cb5_1
  certifi            pkgs/main/osx-64::certifi-2021.5.30-py39hecd8cb5_0
  cffi               pkgs/main/osx-64::cffi-1.14.6-py39h2125817_0
  chardet            pkgs/main/osx-64::chardet-4.0.0-py39hecd8cb5_1003
  conda              pkgs/main/osx-64::conda-4.10.3-py39hecd8cb5_0
  conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.7.3-py39h9ed2024_1
  cryptography       pkgs/main/osx-64::cryptography-3.4.7-py39h2fd3fbb_0
  idna               pkgs/main/noarch::idna-2.10-pyhd3eb1b0_0
  libcxx             pkgs/main/osx-64::libcxx-10.0.0-1
  libffi             pkgs/main/osx-64::libffi-3.3-hb1e8313_2
  ncurses            pkgs/main/osx-64::ncurses-6.2-h0a44026_1
  openssl            pkgs/main/osx-64::openssl-1.1.1k-h9ed2024_0
  pip                pkgs/main/osx-64::pip-21.1.3-py39hecd8cb5_0
  pycosat            pkgs/main/osx-64::pycosat-0.6.3-py39h9ed2024_0
  pycparser          pkgs/main/noarch::pycparser-2.20-py_2
  pyopenssl          pkgs/main/noarch::pyopenssl-20.0.1-pyhd3eb1b0_1
  pysocks            pkgs/main/osx-64::pysocks-1.7.1-py39hecd8cb5_0
  python             pkgs/main/osx-64::python-3.9.5-h88f2d9e_3
  python.app         pkgs/main/osx-64::python.app-3-py39h9ed2024_0
  readline           pkgs/main/osx-64::readline-8.1-h9ed2024_0
  requests           pkgs/main/noarch::requests-2.25.1-pyhd3eb1b0_0
  ruamel_yaml        pkgs/main/osx-64::ruamel_yaml-0.15.100-py39h9ed2024_0
  setuptools         pkgs/main/osx-64::setuptools-52.0.0-py39hecd8cb5_0
  six                pkgs/main/noarch::six-1.16.0-pyhd3eb1b0_0
  sqlite             pkgs/main/osx-64::sqlite-3.36.0-hce871da_0
  tk                 pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0
  tqdm               pkgs/main/noarch::tqdm-4.61.2-pyhd3eb1b0_1
  tzdata             pkgs/main/noarch::tzdata-2021a-h52ac0ba_0
  urllib3            pkgs/main/noarch::urllib3-1.26.6-pyhd3eb1b0_1
  wheel              pkgs/main/noarch::wheel-0.36.2-pyhd3eb1b0_0
  xz                 pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
  yaml               pkgs/main/osx-64::yaml-0.2.5-haf1e3a3_0
  zlib               pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3


Preparing transaction: ...working... done
Executing transaction: ...working... 
done
installation finished.

[0;32mCreating conda environment...[0m

Collecting package metadata (current_repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/python/envs/venv_sct

  added / updated specs:
    - python=3.7


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    ca-certificates-2021.10.8  |       h033912b_0         139 KB  conda-forge
    libcxx-12.0.1              |       habf9029_1         1.1 MB  conda-forge
    libffi-3.4.2               |       h0d85af4_5          50 KB  conda-forge
    libzlib-1.2.11             |    h9173be1_1013          58 KB  conda-forge
    ncurses-6.3                |       he49afe7_0         926 KB  conda-forge
    openssl-3.0.0              |       h0d85af4_2         2.5 MB  conda-forge
    pip-21.3.1                 |     pyhd8ed1ab_0         1.2 MB  conda-forge
    python-3.7.12              |hf3644f1_100_cpython        24.3 MB  conda-forge
    python_abi-3.7             |          2_cp37m           4 KB  conda-forge
    readline-8.1               |       h05e3726_0         266 KB  conda-forge
    setuptools-60.5.0          |   py37hf985489_0        1022 KB  conda-forge
    sqlite-3.37.0              |       h23a322b_0         1.8 MB  conda-forge
    tk-8.6.11                  |       h5dbffcc_1         3.3 MB  conda-forge
    wheel-0.37.1               |     pyhd8ed1ab_0          31 KB  conda-forge
    xz-5.2.5                   |       haf1e3a3_1         228 KB  conda-forge
    zlib-1.2.11                |    h9173be1_1013          87 KB  conda-forge
    ------------------------------------------------------------
                                           Total:        36.9 MB

The following NEW packages will be INSTALLED:

  ca-certificates    conda-forge/osx-64::ca-certificates-2021.10.8-h033912b_0
  libcxx             conda-forge/osx-64::libcxx-12.0.1-habf9029_1
  libffi             conda-forge/osx-64::libffi-3.4.2-h0d85af4_5
  libzlib            conda-forge/osx-64::libzlib-1.2.11-h9173be1_1013
  ncurses            conda-forge/osx-64::ncurses-6.3-he49afe7_0
  openssl            conda-forge/osx-64::openssl-3.0.0-h0d85af4_2
  pip                conda-forge/noarch::pip-21.3.1-pyhd8ed1ab_0
  python             conda-forge/osx-64::python-3.7.12-hf3644f1_100_cpython
  python_abi         conda-forge/osx-64::python_abi-3.7-2_cp37m
  readline           conda-forge/osx-64::readline-8.1-h05e3726_0
  setuptools         conda-forge/osx-64::setuptools-60.5.0-py37hf985489_0
  sqlite             conda-forge/osx-64::sqlite-3.37.0-h23a322b_0
  tk                 conda-forge/osx-64::tk-8.6.11-h5dbffcc_1
  wheel              conda-forge/noarch::wheel-0.37.1-pyhd8ed1ab_0
  xz                 conda-forge/osx-64::xz-5.2.5-haf1e3a3_1
  zlib               conda-forge/osx-64::zlib-1.2.11-h9173be1_1013


Downloading and Extracting Packages
ca-certificates-2021 | 139 KB    |            |   0% ca-certificates-2021 | 139 KB    | #1         |  12% ca-certificates-2021 | 139 KB    | ########## | 100% 
tk-8.6.11            | 3.3 MB    |            |   0% tk-8.6.11            | 3.3 MB    | 1          |   2% tk-8.6.11            | 3.3 MB    | 8          |   8% tk-8.6.11            | 3.3 MB    | #5         |  16% tk-8.6.11            | 3.3 MB    | ##2        |  22% tk-8.6.11            | 3.3 MB    | ##9        |  29% tk-8.6.11            | 3.3 MB    | ###6       |  36% tk-8.6.11            | 3.3 MB    | ####2      |  43% tk-8.6.11            | 3.3 MB    | ####9      |  50% tk-8.6.11            | 3.3 MB    | #####6     |  56% tk-8.6.11            | 3.3 MB    | ######2    |  63% tk-8.6.11            | 3.3 MB    | ######9    |  69% tk-8.6.11            | 3.3 MB    | #######5   |  76% tk-8.6.11            | 3.3 MB    | ########2  |  83% tk-8.6.11            | 3.3 MB    | ########9  |  90% tk-8.6.11            | 3.3 MB    | #########6 |  96% tk-8.6.11            | 3.3 MB    | ########## | 100% 
setuptools-60.5.0    | 1022 KB   |            |   0% setuptools-60.5.0    | 1022 KB   | 4          |   5% setuptools-60.5.0    | 1022 KB   | ##6        |  27% setuptools-60.5.0    | 1022 KB   | #####      |  50% setuptools-60.5.0    | 1022 KB   | #######3   |  74% setuptools-60.5.0    | 1022 KB   | #########7 |  97% setuptools-60.5.0    | 1022 KB   | ########## | 100% 
libcxx-12.0.1        | 1.1 MB    |            |   0% libcxx-12.0.1        | 1.1 MB    | 8          |   9% libcxx-12.0.1        | 1.1 MB    | ##9        |  30% libcxx-12.0.1        | 1.1 MB    | #####2     |  52% libcxx-12.0.1        | 1.1 MB    | #######2   |  73% libcxx-12.0.1        | 1.1 MB    | #########5 |  95% libcxx-12.0.1        | 1.1 MB    | ########## | 100% 
xz-5.2.5             | 228 KB    |            |   0% xz-5.2.5             | 228 KB    | ####2      |  42% xz-5.2.5             | 228 KB    | ########## | 100% xz-5.2.5             | 228 KB    | ########## | 100% 
libffi-3.4.2         | 50 KB     |            |   0% libffi-3.4.2         | 50 KB     | ########## | 100% 
zlib-1.2.11          | 87 KB     |            |   0% zlib-1.2.11          | 87 KB     | ########## | 100% zlib-1.2.11          | 87 KB     | ########## | 100% 
openssl-3.0.0        | 2.5 MB    |            |   0% openssl-3.0.0        | 2.5 MB    | 3          |   4% openssl-3.0.0        | 2.5 MB    | #3         |  13% openssl-3.0.0        | 2.5 MB    | ##3        |  24% openssl-3.0.0        | 2.5 MB    | ###2       |  33% openssl-3.0.0        | 2.5 MB    | ####1      |  42% openssl-3.0.0        | 2.5 MB    | #####      |  50% openssl-3.0.0        | 2.5 MB    | #####9     |  60% openssl-3.0.0        | 2.5 MB    | ######8    |  69% openssl-3.0.0        | 2.5 MB    | #######8   |  78% openssl-3.0.0        | 2.5 MB    | ########7  |  87% openssl-3.0.0        | 2.5 MB    | #########6 |  97% openssl-3.0.0        | 2.5 MB    | ########## | 100% 
python_abi-3.7       | 4 KB      |            |   0% python_abi-3.7       | 4 KB      | ########## | 100% 
wheel-0.37.1         | 31 KB     |            |   0% wheel-0.37.1         | 31 KB     | ########## | 100% 
readline-8.1         | 266 KB    |            |   0% readline-8.1         | 266 KB    | ###        |  30% readline-8.1         | 266 KB    | ########## | 100% readline-8.1         | 266 KB    | ########## | 100% 
libzlib-1.2.11       | 58 KB     |            |   0% libzlib-1.2.11       | 58 KB     | ##7        |  28% libzlib-1.2.11       | 58 KB     | ########## | 100% 
ncurses-6.3          | 926 KB    |            |   0% ncurses-6.3          | 926 KB    | #2         |  12% ncurses-6.3          | 926 KB    | ###6       |  36% ncurses-6.3          | 926 KB    | ######2    |  62% ncurses-6.3          | 926 KB    | ########8  |  88% ncurses-6.3          | 926 KB    | ########## | 100% 
sqlite-3.37.0        | 1.8 MB    |            |   0% sqlite-3.37.0        | 1.8 MB    |            |   1% sqlite-3.37.0        | 1.8 MB    | #3         |  13% sqlite-3.37.0        | 1.8 MB    | ##6        |  27% sqlite-3.37.0        | 1.8 MB    | ###9       |  40% sqlite-3.37.0        | 1.8 MB    | #####2     |  52% sqlite-3.37.0        | 1.8 MB    | ######4    |  65% sqlite-3.37.0        | 1.8 MB    | #######8   |  78% sqlite-3.37.0        | 1.8 MB    | #########  |  91% sqlite-3.37.0        | 1.8 MB    | ########## | 100% 
pip-21.3.1           | 1.2 MB    |            |   0% pip-21.3.1           | 1.2 MB    | 9          |   9% pip-21.3.1           | 1.2 MB    | ##8        |  29% pip-21.3.1           | 1.2 MB    | ####8      |  48% pip-21.3.1           | 1.2 MB    | ######7    |  68% pip-21.3.1           | 1.2 MB    | ########7  |  87% pip-21.3.1           | 1.2 MB    | ########## | 100% 
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Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
#
# To activate this environment, use
#
#     $ conda activate venv_sct
#
# To deactivate an active environment, use
#
#     $ conda deactivate


[0;32mValidating that conda environment can be activated...[0m

Requirement already satisfied: pip!=21.2.* in ./python/envs/venv_sct/lib/python3.7/site-packages (21.3.1)

[0;32mInstalling spinalcordtoolbox and its Python dependencies...[0m

Looking in links: https://download.pytorch.org/whl/cpu/torch_stable.html
Obtaining file:///Users/en_tetteh/NEUROPOLY/spinalcordtoolbox
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Installing collected packages: six, zipp, typing-extensions, pytz, python-dateutil, pyparsing, pycparser, numpy, wrapt, scipy, pillow, pandas, packaging, kiwisolver, interface-meta, importlib-metadata, future, fonttools, docopt, cycler, cffi, astor, wheel, werkzeug, tqdm, torch, tomli, toml, tifffile, threadpoolctl, sqlalchemy, SimpleITK, setuptools, PyWavelets, py, protobuf, pluggy, num2words, nibabel, networkx, matplotlib, markdown, joblib, iniconfig, imageio, humanize, h5py, grpcio, formulaic, dictdiffer, Deprecated, cryptography, coverage, click, bids-validator, attrs, absl-py, urllib3, types-setuptools, torchio, termcolor, tensorflow-estimator, tensorboard, seaborn, scikit-learn, scikit-image, pyyaml, pytest, PyQt5-sip, pyOpenSSL, pybids, opt-einsum, onnxruntime, mock, loguru, keras-preprocessing, keras-applications, idna, google-pasta, gast, csv-diff, charset-normalizer, certifi, xlwt, wquantiles, transforms3d, torchvision, tensorflow, requirements-parser, requests, raven, pytest-cov, pytest-console-scripts, pyqt5, psutil, Keras, ivadomed, dipy, colored, spinalcordtoolbox
  Running setup.py develop for spinalcordtoolbox
Successfully installed Deprecated-1.2.13 Keras-2.3.1 PyQt5-sip-4.19.19 PyWavelets-1.2.0 SimpleITK-2.1.1 absl-py-1.0.0 astor-0.8.1 attrs-21.4.0 bids-validator-1.8.9 certifi-2021.10.8 cffi-1.15.0 charset-normalizer-2.0.10 click-8.0.3 colored-1.4.3 coverage-6.3 cryptography-36.0.1 csv-diff-1.1 cycler-0.11.0 dictdiffer-0.9.0 dipy-1.4.1 docopt-0.6.2 fonttools-4.29.0 formulaic-0.2.4 future-0.18.2 gast-0.2.2 google-pasta-0.2.0 grpcio-1.43.0 h5py-2.10.0 humanize-3.13.1 idna-3.3 imageio-2.14.1 importlib-metadata-4.10.1 iniconfig-1.1.1 interface-meta-1.2.4 ivadomed-2.9.2 joblib-1.1.0 keras-applications-1.0.8 keras-preprocessing-1.1.2 kiwisolver-1.3.2 loguru-0.5.3 markdown-3.3.6 matplotlib-3.5.1 mock-4.0.3 networkx-2.6.3 nibabel-3.2.1 num2words-0.5.10 numpy-1.18.5 onnxruntime-1.7.0 opt-einsum-3.3.0 packaging-21.3 pandas-1.3.5 pillow-9.0.0 pluggy-1.0.0 protobuf-3.19.3 psutil-5.9.0 py-1.11.0 pyOpenSSL-21.0.0 pybids-0.14.0 pycparser-2.21 pyparsing-2.4.7 pyqt5-5.11.3 pytest-6.2.5 pytest-console-scripts-1.2.2 pytest-cov-3.0.0 python-dateutil-2.8.2 pytz-2021.3 pyyaml-6.0 raven-6.10.0 requests-2.27.1 requirements-parser-0.5.0 scikit-image-0.19.1 scikit-learn-1.0.2 scipy-1.7.3 seaborn-0.11.2 setuptools-60.5.0 six-1.16.0 spinalcordtoolbox-dev sqlalchemy-1.3.24 tensorboard-1.15.0 tensorflow-1.15.5 tensorflow-estimator-1.15.1 termcolor-1.1.0 threadpoolctl-3.0.0 tifffile-2021.11.2 toml-0.10.2 tomli-2.0.0 torch-1.5.0 torchio-0.18.72 torchvision-0.6.0 tqdm-4.62.3 transforms3d-0.3.1 types-setuptools-57.4.7 typing-extensions-4.0.1 urllib3-1.26.8 werkzeug-2.0.2 wheel-0.37.1 wquantiles-0.6 wrapt-1.13.3 xlwt-1.3.0 zipp-3.7.0

[0;32mAVX is not supported on M1 Macs! Installing a version of TensorFlow compiled for M1 Macs...[0m

Found existing installation: tensorflow 1.15.5
Uninstalling tensorflow-1.15.5:
  Successfully uninstalled tensorflow-1.15.5
Collecting tensorflow==1.15.0
  Downloading https://github.com/spinalcordtoolbox/docker-tensorflow-builder/releases/download/v1.15.5-py3.7/tensorflow-1.15.0-py3-none-any.whl (124.3 MB)
Requirement already satisfied: opt-einsum>=2.3.2 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (3.3.0)
Requirement already satisfied: keras-applications>=1.0.8 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.0.8)
Requirement already satisfied: keras-preprocessing>=1.0.5 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.1.2)
Requirement already satisfied: tensorboard<1.16.0,>=1.15.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.15.0)
Requirement already satisfied: six>=1.10.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.16.0)
Requirement already satisfied: absl-py>=0.7.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.0.0)
Requirement already satisfied: astor>=0.6.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (0.8.1)
Requirement already satisfied: google-pasta>=0.1.6 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (0.2.0)
Requirement already satisfied: numpy<2.0,>=1.16.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.18.5)
Requirement already satisfied: tensorflow-estimator==1.15.1 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.15.1)
Requirement already satisfied: grpcio>=1.8.6 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.43.0)
Requirement already satisfied: protobuf>=3.6.1 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (3.19.3)
Requirement already satisfied: wheel>=0.26 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (0.37.1)
Requirement already satisfied: wrapt>=1.11.1 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.13.3)
Requirement already satisfied: gast==0.2.2 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (0.2.2)
Requirement already satisfied: termcolor>=1.1.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorflow==1.15.0) (1.1.0)
Requirement already satisfied: h5py in ./python/envs/venv_sct/lib/python3.7/site-packages (from keras-applications>=1.0.8->tensorflow==1.15.0) (2.10.0)
Requirement already satisfied: setuptools>=41.0.0 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorboard<1.16.0,>=1.15.0->tensorflow==1.15.0) (60.5.0)
Requirement already satisfied: markdown>=2.6.8 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorboard<1.16.0,>=1.15.0->tensorflow==1.15.0) (3.3.6)
Requirement already satisfied: werkzeug>=0.11.15 in ./python/envs/venv_sct/lib/python3.7/site-packages (from tensorboard<1.16.0,>=1.15.0->tensorflow==1.15.0) (2.0.2)
Requirement already satisfied: importlib-metadata>=4.4 in ./python/envs/venv_sct/lib/python3.7/site-packages (from markdown>=2.6.8->tensorboard<1.16.0,>=1.15.0->tensorflow==1.15.0) (4.10.1)
Requirement already satisfied: zipp>=0.5 in ./python/envs/venv_sct/lib/python3.7/site-packages (from importlib-metadata>=4.4->markdown>=2.6.8->tensorboard<1.16.0,>=1.15.0->tensorflow==1.15.0) (3.7.0)
Requirement already satisfied: typing-extensions>=3.6.4 in ./python/envs/venv_sct/lib/python3.7/site-packages (from importlib-metadata>=4.4->markdown>=2.6.8->tensorboard<1.16.0,>=1.15.0->tensorflow==1.15.0) (4.0.1)
Installing collected packages: tensorflow
Successfully installed tensorflow-1.15.0

[0;32mCreating launchers for Python scripts...[0m


[0;32mInstalling binaries...[0m


[0;34msct_download_data -d binaries_osx -k[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d binaries_osx -k
--

Trying URL: https://osf.io/874cy?action=download
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100%|█████████▉| 60.7M/60.8M [00:28<00:00, 2.25MB/s]Status: 100%|██████████| 60.8M/60.8M [00:28<00:00, 2.14MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140747.695388-bj3c7zdm)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140747.695388-bj3c7zdm
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/bin
Removing temporary folders...

Done!


[0;32mAll requirements installed![0m


[0;32mInstalling data...[0m


[0;34mrm -rf /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data[0m


[0;34mmkdir -p /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data[0m


[0;34msct_download_data -d PAM50[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d PAM50
--

Trying URL: https://github.com/spinalcordtoolbox/PAM50/releases/download/r20201104/PAM50-r20201104.zip
Downloading: PAM50-r20201104.zip
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2.27MB/s]Status:  75%|███████▌  | 53.2M/70.9M [00:24<00:07, 2.25MB/s]Status:  75%|███████▌  | 53.4M/70.9M [00:24<00:08, 2.07MB/s]Status:  76%|███████▌  | 53.6M/70.9M [00:24<00:10, 1.62MB/s]Status:  76%|███████▌  | 53.8M/70.9M [00:24<00:10, 1.65MB/s]Status:  76%|███████▋  | 54.1M/70.9M [00:24<00:09, 1.80MB/s]Status:  77%|███████▋  | 54.3M/70.9M [00:25<00:08, 2.04MB/s]Status:  77%|███████▋  | 54.6M/70.9M [00:25<00:07, 2.09MB/s]Status:  77%|███████▋  | 54.8M/70.9M [00:25<00:07, 2.13MB/s]Status:  78%|███████▊  | 55.0M/70.9M [00:25<00:07, 2.15MB/s]Status:  78%|███████▊  | 55.3M/70.9M [00:25<00:07, 2.19MB/s]Status:  78%|███████▊  | 55.5M/70.9M [00:25<00:07, 2.19MB/s]Status:  79%|███████▊  | 55.7M/70.9M [00:25<00:06, 2.23MB/s]Status:  79%|███████▉  | 56.0M/70.9M [00:25<00:06, 2.23MB/s]Status:  79%|███████▉  | 56.2M/70.9M [00:25<00:06, 2.23MB/s]Status:  80%|███████▉  | 56.4M/70.9M [00:25<00:06, 2.23MB/s]Status:  80%|███████▉  | 56.7M/70.9M [00:26<00:06, 2.26MB/s]Status:  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[00:29<00:02, 2.24MB/s]Status:  91%|█████████ | 64.7M/70.9M [00:29<00:02, 2.26MB/s]Status:  92%|█████████▏| 64.9M/70.9M [00:29<00:02, 2.26MB/s]Status:  92%|█████████▏| 65.1M/70.9M [00:29<00:02, 2.14MB/s]Status:  92%|█████████▏| 65.4M/70.9M [00:29<00:02, 2.29MB/s]Status:  93%|█████████▎| 65.7M/70.9M [00:30<00:02, 2.29MB/s]Status:  93%|█████████▎| 65.9M/70.9M [00:30<00:02, 2.26MB/s]Status:  93%|█████████▎| 66.1M/70.9M [00:30<00:02, 2.26MB/s]Status:  94%|█████████▎| 66.4M/70.9M [00:30<00:02, 2.26MB/s]Status:  94%|█████████▍| 66.6M/70.9M [00:30<00:01, 2.26MB/s]Status:  94%|█████████▍| 66.8M/70.9M [00:30<00:01, 2.25MB/s]Status:  95%|█████████▍| 67.1M/70.9M [00:30<00:02, 1.32MB/s]Status:  95%|█████████▌| 67.4M/70.9M [00:31<00:02, 1.65MB/s]Status:  96%|█████████▌| 68.1M/70.9M [00:31<00:01, 2.76MB/s]Status:  97%|█████████▋| 68.4M/70.9M [00:31<00:00, 2.60MB/s]Status:  97%|█████████▋| 68.8M/70.9M [00:31<00:00, 2.47MB/s]Status:  97%|█████████▋| 69.0M/70.9M [00:31<00:00, 2.38MB/s]Status:  98%|█████████▊| 69.3M/70.9M [00:31<00:00, 2.37MB/s]Status:  98%|█████████▊| 69.6M/70.9M [00:31<00:00, 2.36MB/s]Status:  98%|█████████▊| 69.8M/70.9M [00:31<00:00, 2.30MB/s]Status:  99%|█████████▉| 70.1M/70.9M [00:31<00:00, 2.29MB/s]Status:  99%|█████████▉| 70.3M/70.9M [00:32<00:00, 2.28MB/s]Status: 100%|█████████▉| 70.5M/70.9M [00:32<00:00, 2.29MB/s]Status: 100%|█████████▉| 70.8M/70.9M [00:32<00:00, 2.30MB/s]Status: 100%|██████████| 70.9M/70.9M [00:32<00:00, 2.19MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140823.307669-vpollw9i)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140823.307669-vpollw9i
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/PAM50
Removing temporary folders...

Done!


[0;34msct_download_data -d gm_model[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d gm_model
--

Trying URL: https://osf.io/ugscu/?action=download
Downloading: 20160922_gm_model.zip
Status:   0%|          | 0.00/10.3M [00:00<?, ?B/s]Status:   3%|▎         | 270k/10.3M [00:00<00:03, 2.68MB/s]Status:   5%|▌         | 541k/10.3M [00:00<00:04, 2.33MB/s]Status:   8%|▊         | 778k/10.3M [00:00<00:04, 2.27MB/s]Status:  10%|▉         | 1.01M/10.3M [00:00<00:04, 2.25MB/s]Status:  12%|█▏        | 1.24M/10.3M [00:00<00:04, 2.23MB/s]Status:  14%|█▍        | 1.47M/10.3M [00:00<00:03, 2.23MB/s]Status:  17%|█▋        | 1.70M/10.3M [00:00<00:03, 2.23MB/s]Status:  19%|█▊        | 1.93M/10.3M [00:00<00:03, 2.20MB/s]Status:  21%|██        | 2.15M/10.3M [00:00<00:03, 2.19MB/s]Status:  23%|██▎       | 2.38M/10.3M [00:01<00:03, 2.16MB/s]Status:  26%|██▌       | 2.62M/10.3M [00:01<00:03, 2.20MB/s]Status:  28%|██▊       | 2.85M/10.3M [00:01<00:03, 2.20MB/s]Status:  30%|██▉       | 3.08M/10.3M [00:01<00:03, 2.23MB/s]Status:  32%|███▏      | 3.31M/10.3M [00:01<00:03, 2.06MB/s]Status:  34%|███▍      | 3.54M/10.3M [00:01<00:03, 2.10MB/s]Status:  37%|███▋      | 3.78M/10.3M [00:01<00:02, 2.19MB/s]Status:  39%|███▉      | 4.01M/10.3M [00:01<00:02, 2.18MB/s]Status:  41%|████▏     | 4.24M/10.3M [00:01<00:02, 2.18MB/s]Status:  44%|████▎     | 4.47M/10.3M [00:02<00:02, 2.21MB/s]Status:  46%|████▌     | 4.70M/10.3M [00:02<00:02, 2.21MB/s]Status:  48%|████▊     | 4.93M/10.3M [00:02<00:02, 2.19MB/s]Status:  50%|█████     | 5.18M/10.3M [00:02<00:02, 2.24MB/s]Status:  53%|█████▎    | 5.41M/10.3M [00:02<00:02, 2.15MB/s]Status:  55%|█████▍    | 5.64M/10.3M [00:02<00:02, 2.17MB/s]Status:  57%|█████▋    | 5.87M/10.3M [00:02<00:02, 2.19MB/s]Status:  59%|█████▉    | 6.09M/10.3M [00:02<00:01, 2.21MB/s]Status:  62%|██████▏   | 6.32M/10.3M [00:02<00:01, 2.22MB/s]Status:  64%|██████▍   | 6.55M/10.3M [00:02<00:01, 2.20MB/s]Status:  66%|██████▌   | 6.77M/10.3M [00:03<00:01, 2.14MB/s]Status:  68%|██████▊   | 7.01M/10.3M [00:03<00:01, 2.15MB/s]Status:  71%|███████   | 7.26M/10.3M [00:03<00:01, 2.18MB/s]Status:  73%|███████▎  | 7.49M/10.3M [00:03<00:01, 2.21MB/s]Status:  75%|███████▌  | 7.72M/10.3M [00:03<00:01, 2.21MB/s]Status:  78%|███████▊  | 7.96M/10.3M [00:03<00:01, 2.21MB/s]Status:  80%|███████▉  | 8.19M/10.3M [00:03<00:00, 2.19MB/s]Status:  82%|████████▏ | 8.44M/10.3M [00:03<00:00, 2.22MB/s]Status:  84%|████████▍ | 8.67M/10.3M [00:03<00:00, 2.21MB/s]Status:  87%|████████▋ | 8.90M/10.3M [00:04<00:00, 2.22MB/s]Status:  89%|████████▉ | 9.13M/10.3M [00:04<00:00, 2.23MB/s]Status:  91%|█████████ | 9.36M/10.3M [00:04<00:00, 2.20MB/s]Status:  93%|█████████▎| 9.60M/10.3M [00:04<00:00, 2.25MB/s]Status:  96%|█████████▌| 9.83M/10.3M [00:04<00:00, 2.26MB/s]Status:  98%|█████████▊| 10.1M/10.3M [00:04<00:00, 2.21MB/s]Status: 100%|██████████| 10.3M/10.3M [00:04<00:00, 2.21MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140830.148956-pa8yea3e)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140830.148956-pa8yea3e
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/gm_model
Removing temporary folders...

Done!


[0;34msct_download_data -d optic_models[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d optic_models
--

Trying URL: https://github.com/spinalcordtoolbox/optic_models/releases/download/r20170413/20170413_optic_models.zip
Downloading: 20170413_optic_models.zip
Status:   0%|          | 0.00/17.7k [00:00<?, ?B/s]Status: 100%|██████████| 17.7k/17.7k [00:00<00:00, 24.9MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140831.553462-rddfqaez)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140831.553462-rddfqaez
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/optic_models
Removing temporary folders...

Done!


[0;34msct_download_data -d pmj_models[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d pmj_models
--

Trying URL: https://github.com/spinalcordtoolbox/pmj_models/releases/download/r20170922/20170922_pmj_models.zip
Downloading: 20170922_pmj_models.zip
Status:   0%|          | 0.00/8.87k [00:00<?, ?B/s]Status: 100%|██████████| 8.87k/8.87k [00:00<00:00, 23.9MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140832.687932-hjvdeuob)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140832.687932-hjvdeuob
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/pmj_models
Removing temporary folders...

Done!


[0;34msct_download_data -d deepseg_sc_models[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d deepseg_sc_models
--

Trying URL: https://github.com/spinalcordtoolbox/deepseg_sc_models/releases/download/r20180610/20180610_deepseg_sc_models.zip
Downloading: 20180610_deepseg_sc_models.zip
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2.23MB/s]Status:  90%|█████████ | 53.1M/58.7M [00:23<00:02, 2.24MB/s]Status:  91%|█████████ | 53.3M/58.7M [00:24<00:02, 2.25MB/s]Status:  91%|█████████ | 53.6M/58.7M [00:24<00:02, 2.20MB/s]Status:  92%|█████████▏| 53.8M/58.7M [00:24<00:02, 2.25MB/s]Status:  92%|█████████▏| 54.0M/58.7M [00:24<00:02, 2.16MB/s]Status:  92%|█████████▏| 54.3M/58.7M [00:24<00:01, 2.26MB/s]Status:  93%|█████████▎| 54.5M/58.7M [00:24<00:01, 2.27MB/s]Status:  93%|█████████▎| 54.8M/58.7M [00:24<00:01, 2.26MB/s]Status:  94%|█████████▎| 55.0M/58.7M [00:24<00:01, 2.13MB/s]Status:  94%|█████████▍| 55.3M/58.7M [00:24<00:01, 2.28MB/s]Status:  95%|█████████▍| 55.5M/58.7M [00:25<00:01, 2.29MB/s]Status:  95%|█████████▍| 55.8M/58.7M [00:25<00:01, 2.31MB/s]Status:  95%|█████████▌| 56.0M/58.7M [00:25<00:01, 2.26MB/s]Status:  96%|█████████▌| 56.2M/58.7M [00:25<00:01, 2.24MB/s]Status:  96%|█████████▌| 56.5M/58.7M [00:25<00:00, 2.25MB/s]Status:  97%|█████████▋| 56.7M/58.7M [00:25<00:00, 2.25MB/s]Status:  97%|█████████▋| 56.9M/58.7M [00:25<00:00, 2.23MB/s]Status:  97%|█████████▋| 57.1M/58.7M [00:25<00:00, 2.24MB/s]Status:  98%|█████████▊| 57.4M/58.7M [00:25<00:00, 2.22MB/s]Status:  98%|█████████▊| 57.6M/58.7M [00:25<00:00, 2.22MB/s]Status:  99%|█████████▊| 57.8M/58.7M [00:26<00:00, 2.24MB/s]Status:  99%|█████████▉| 58.1M/58.7M [00:26<00:00, 2.26MB/s]Status:  99%|█████████▉| 58.3M/58.7M [00:26<00:00, 2.22MB/s]Status: 100%|█████████▉| 58.5M/58.7M [00:26<00:00, 2.23MB/s]Status: 100%|██████████| 58.7M/58.7M [00:26<00:00, 2.22MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140900.291960-jubaxb7t)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140900.291960-jubaxb7t
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/deepseg_sc_models
Removing temporary folders...

Done!


[0;34msct_download_data -d deepseg_gm_models[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d deepseg_gm_models
--

Trying URL: https://github.com/spinalcordtoolbox/deepseg_gm_models/releases/download/r20180205/20180205_deepseg_gm_models.zip
Downloading: 20180205_deepseg_gm_models.zip
Status:   0%|          | 0.00/2.28M [00:00<?, ?B/s]Status:  11%|█         | 246k/2.28M [00:00<00:00, 2.36MB/s]Status:  21%|██        | 483k/2.28M [00:00<00:00, 2.31MB/s]Status:  32%|███▏      | 721k/2.28M [00:00<00:00, 2.29MB/s]Status:  42%|████▏     | 950k/2.28M [00:00<00:00, 2.23MB/s]Status:  52%|█████▏    | 1.18M/2.28M [00:00<00:00, 2.25MB/s]Status:  62%|██████▏   | 1.41M/2.28M [00:00<00:00, 2.25MB/s]Status:  72%|███████▏  | 1.64M/2.28M [00:00<00:00, 2.24MB/s]Status:  82%|████████▏ | 1.87M/2.28M [00:00<00:00, 2.20MB/s]Status:  92%|█████████▏| 2.09M/2.28M [00:00<00:00, 2.15MB/s]Status: 100%|██████████| 2.28M/2.28M [00:01<00:00, 2.25MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140903.317300-u1pcj1gu)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140903.317300-u1pcj1gu
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/deepseg_gm_models
Removing temporary folders...

Done!


[0;34msct_download_data -d deepseg_lesion_models[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d deepseg_lesion_models
--

Trying URL: https://github.com/spinalcordtoolbox/deepseg_lesion_models/releases/download/r20180613/20180613_deepseg_lesion_models.zip
Downloading: 20180613_deepseg_lesion_models.zip
Status:   0%|          | 0.00/16.0M [00:00<?, ?B/s]Status:   2%|▏         | 246k/16.0M [00:00<00:06, 2.41MB/s]Status:   3%|▎         | 492k/16.0M [00:00<00:06, 2.29MB/s]Status:   5%|▍         | 729k/16.0M [00:00<00:06, 2.27MB/s]Status:   6%|▌         | 958k/16.0M [00:00<00:06, 2.27MB/s]Status:   7%|▋         | 1.19M/16.0M [00:00<00:06, 2.24MB/s]Status:   9%|▉         | 1.42M/16.0M [00:00<00:06, 2.23MB/s]Status:  10%|█         | 1.65M/16.0M [00:00<00:06, 2.23MB/s]Status:  12%|█▏        | 1.88M/16.0M [00:00<00:06, 2.21MB/s]Status:  13%|█▎        | 2.11M/16.0M [00:00<00:06, 2.23MB/s]Status:  15%|█▍        | 2.33M/16.0M [00:01<00:06, 2.23MB/s]Status:  16%|█▌        | 2.56M/16.0M [00:01<00:06, 2.23MB/s]Status:  17%|█▋        | 2.79M/16.0M [00:01<00:05, 2.23MB/s]Status:  19%|█▉        | 3.02M/16.0M [00:01<00:14, 914kB/s] Status:  20%|██        | 3.28M/16.0M [00:01<00:11, 1.13MB/s]Status:  22%|██▏       | 3.51M/16.0M [00:02<00:09, 1.33MB/s]Status:  23%|██▎       | 3.75M/16.0M [00:02<00:07, 1.53MB/s]Status:  25%|██▍       | 3.98M/16.0M [00:02<00:07, 1.69MB/s]Status:  26%|██▋       | 4.21M/16.0M [00:02<00:06, 1.79MB/s]Status:  28%|██▊       | 4.46M/16.0M [00:02<00:05, 1.93MB/s]Status:  29%|██▉       | 4.69M/16.0M [00:02<00:05, 2.00MB/s]Status:  31%|███       | 4.93M/16.0M [00:02<00:05, 2.08MB/s]Status:  32%|███▏      | 5.16M/16.0M [00:02<00:05, 2.12MB/s]Status:  34%|███▎      | 5.39M/16.0M [00:02<00:04, 2.14MB/s]Status:  35%|███▌      | 5.62M/16.0M [00:02<00:04, 2.18MB/s]Status:  37%|███▋      | 5.85M/16.0M [00:03<00:04, 2.20MB/s]Status:  38%|███▊      | 6.08M/16.0M [00:03<00:04, 2.22MB/s]Status:  40%|███▉      | 6.32M/16.0M [00:03<00:04, 2.24MB/s]Status:  41%|████      | 6.55M/16.0M [00:03<00:04, 2.20MB/s]Status:  42%|████▏     | 6.78M/16.0M [00:03<00:04, 2.01MB/s]Status:  44%|████▍     | 7.03M/16.0M [00:03<00:04, 2.10MB/s]Status:  45%|████▌     | 7.26M/16.0M [00:03<00:04, 2.12MB/s]Status:  47%|████▋     | 7.49M/16.0M [00:03<00:03, 2.16MB/s]Status:  48%|████▊     | 7.72M/16.0M [00:03<00:03, 2.19MB/s]Status:  50%|████▉     | 7.95M/16.0M [00:04<00:03, 2.21MB/s]Status:  51%|█████     | 8.18M/16.0M [00:04<00:03, 2.20MB/s]Status:  53%|█████▎    | 8.40M/16.0M [00:04<00:03, 2.19MB/s]Status:  54%|█████▍    | 8.65M/16.0M [00:04<00:03, 2.20MB/s]Status:  55%|█████▌    | 8.88M/16.0M [00:04<00:03, 2.21MB/s]Status:  57%|█████▋    | 9.11M/16.0M [00:04<00:03, 2.22MB/s]Status:  58%|█████▊    | 9.34M/16.0M [00:04<00:03, 2.22MB/s]Status:  60%|█████▉    | 9.57M/16.0M [00:04<00:03, 2.10MB/s]Status:  61%|██████▏   | 9.81M/16.0M [00:04<00:02, 2.20MB/s]Status:  63%|██████▎   | 10.1M/16.0M [00:05<00:02, 2.24MB/s]Status:  64%|██████▍   | 10.3M/16.0M [00:05<00:02, 2.24MB/s]Status:  66%|██████▌   | 10.5M/16.0M [00:05<00:02, 2.23MB/s]Status:  67%|██████▋   | 10.7M/16.0M [00:05<00:02, 2.21MB/s]Status:  69%|██████▊   | 11.0M/16.0M [00:05<00:02, 2.24MB/s]Status:  70%|███████   | 11.2M/16.0M [00:05<00:02, 2.23MB/s]Status:  72%|███████▏  | 11.5M/16.0M [00:05<00:02, 2.23MB/s]Status:  73%|███████▎  | 11.7M/16.0M [00:05<00:01, 2.21MB/s]Status:  75%|███████▍  | 11.9M/16.0M [00:05<00:01, 2.24MB/s]Status:  76%|███████▌  | 12.2M/16.0M [00:05<00:01, 2.22MB/s]Status:  77%|███████▋  | 12.4M/16.0M [00:06<00:01, 2.21MB/s]Status:  79%|███████▉  | 12.6M/16.0M [00:06<00:01, 2.22MB/s]Status:  80%|████████  | 12.8M/16.0M [00:06<00:01, 2.23MB/s]Status:  82%|████████▏ | 13.1M/16.0M [00:06<00:01, 2.21MB/s]Status:  83%|████████▎ | 13.3M/16.0M [00:06<00:01, 2.23MB/s]Status:  85%|████████▍ | 13.5M/16.0M [00:06<00:01, 2.24MB/s]Status:  86%|████████▌ | 13.8M/16.0M [00:06<00:01, 2.22MB/s]Status:  88%|████████▊ | 14.0M/16.0M [00:06<00:00, 2.21MB/s]Status:  89%|████████▉ | 14.2M/16.0M [00:06<00:00, 2.22MB/s]Status:  90%|█████████ | 14.5M/16.0M [00:07<00:00, 2.21MB/s]Status:  92%|█████████▏| 14.7M/16.0M [00:07<00:00, 2.22MB/s]Status:  93%|█████████▎| 14.9M/16.0M [00:07<00:00, 2.23MB/s]Status:  95%|█████████▍| 15.2M/16.0M [00:07<00:00, 2.23MB/s]Status:  96%|█████████▌| 15.4M/16.0M [00:07<00:00, 2.24MB/s]Status:  98%|█████████▊| 15.6M/16.0M [00:07<00:00, 2.12MB/s]Status:  99%|█████████▉| 15.9M/16.0M [00:07<00:00, 2.26MB/s]Status: 100%|██████████| 16.0M/16.0M [00:07<00:00, 2.08MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140912.278715-lywc_w74)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140912.278715-lywc_w74
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/deepseg_lesion_models
Removing temporary folders...

Done!


[0;34msct_download_data -d c2c3_disc_models[0m


--
Spinal Cord Toolbox (git-master-4010cade328d039ec4180fef63c2998884a524ec)

sct_download_data -d c2c3_disc_models
--

Trying URL: https://github.com/spinalcordtoolbox/c2c3_disc_models/releases/download/r20190117/20190117_c2c3_disc_models.zip
Downloading: 20190117_c2c3_disc_models.zip
Status:   0%|          | 0.00/8.94k [00:00<?, ?B/s]Status: 100%|██████████| 8.94k/8.94k [00:00<00:00, 27.3MB/s]Creating temporary folder (/var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140913.687611-j5d1dj_c)
Unzip data to: /var/folders/jb/g2gx4n4n1y1d2yxg5037s18m0000gn/T/sct-20220125140913.687611-j5d1dj_c
Copying data to: /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/data/c2c3_disc_models
Removing temporary folders...

Done!

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./install_sct: line 263: /Users/en_tetteh/.zshrc: Permission denied

[0;31mInstallation failed!

Please find the file /Users/en_tetteh/NEUROPOLY/spinalcordtoolbox/install_sct_log.txt, 
then upload it as a .txt attachment in a new topic on SCT's forum:
--> http://forum.spinalcordmri.org/c/sct[0m