******************************* * Welcome to SCT installation * *******************************  Checking OS type and version... Linux debian 5.10.0-20-amd64 #1 SMP Debian 5.10.158-2 (2022-12-13) x86_64 GNU/Linux Checking requirements... OK! SCT version ......... 5.8 Installation type ... package Operating system .... linux (unknown) Shell config ........ /home/maryam/.bashrc To improve user experience and fix bugs, the SCT development team is using a report system to automatically receive crash reports and errors from users. These reports are anonymous. Do you agree to help us improve SCT? [y]es/[n]o:  --> Crash reports will be sent to the SCT development team. Thank you! SCT will be installed here: [/home/maryam/sct_5.8]  Do you agree? [y]es/[n]o:  Do you want to add the sct_* scripts to your PATH environment? [y]es/[n]o:  Copying source files from /home/maryam/Desktop/sct to /home/maryam/sct_5.8 ........................................................................................................................................................................................................................................................................................................................................................................................................................... Removing sct and isct softlink from /home/maryam/sct_5.8/bin rm -rf /home/maryam/sct_5.8/python mkdir -p /home/maryam/sct_5.8/python Downloading Miniconda... wget -nv -O /tmp/tmp.QAfoiEpjkI/miniconda.sh https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh 2023-01-26 22:25:28 URL:https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh [72402405/72402405] -> "/tmp/tmp.QAfoiEpjkI/miniconda.sh" [1] Installing Miniconda... bash /tmp/tmp.QAfoiEpjkI/miniconda.sh -p /home/maryam/sct_5.8/python -b -f PREFIX=/home/maryam/sct_5.8/python Unpacking payload ... 0%| | 0/43 [00:00 WARNING: A newer version of conda exists. <== current version: 22.11.1 latest version: 23.1.0 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.1.0 ## Package Plan ## environment location: /home/maryam/sct_5.8/python/envs/venv_sct added / updated specs: - python=3.8 The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2023.01.10 | h06a4308_0 120 KB certifi-2022.12.7 | py38h06a4308_0 150 KB ncurses-6.4 | h6a678d5_0 914 KB pip-22.3.1 | py38h06a4308_0 2.7 MB python-3.8.16 | h7a1cb2a_2 23.9 MB setuptools-65.6.3 | py38h06a4308_0 1.1 MB sqlite-3.40.1 | h5082296_0 1.2 MB xz-5.2.10 | h5eee18b_1 429 KB ------------------------------------------------------------ Total: 30.5 MB The following NEW packages will be INSTALLED: _libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main _openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu ca-certificates pkgs/main/linux-64::ca-certificates-2023.01.10-h06a4308_0 certifi pkgs/main/linux-64::certifi-2022.12.7-py38h06a4308_0 ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1 libffi pkgs/main/linux-64::libffi-3.4.2-h6a678d5_6 libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1 libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1 libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1 ncurses pkgs/main/linux-64::ncurses-6.4-h6a678d5_0 openssl pkgs/main/linux-64::openssl-1.1.1s-h7f8727e_0 pip pkgs/main/linux-64::pip-22.3.1-py38h06a4308_0 python pkgs/main/linux-64::python-3.8.16-h7a1cb2a_2 readline pkgs/main/linux-64::readline-8.2-h5eee18b_0 setuptools pkgs/main/linux-64::setuptools-65.6.3-py38h06a4308_0 sqlite pkgs/main/linux-64::sqlite-3.40.1-h5082296_0 tk pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0 wheel pkgs/main/noarch::wheel-0.37.1-pyhd3eb1b0_0 xz pkgs/main/linux-64::xz-5.2.10-h5eee18b_1 zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_0 Downloading and Extracting Packages pip-22.3.1 | 2.7 MB | | 0% sqlite-3.40.1 | 1.2 MB | | 0%  certifi-2022.12.7 | 150 KB | | 0%  xz-5.2.10 | 429 KB | | 0%  ca-certificates-2023 | 120 KB | | 0%  setuptools-65.6.3 | 1.1 MB | | 0%  python-3.8.16 | 23.9 MB | | 0%  ncurses-6.4 | 914 KB | | 0%  certifi-2022.12.7 | 150 KB | # | 11%  pip-22.3.1 | 2.7 MB | | 1% certifi-2022.12.7 | 150 KB | ##1 | 21%  sqlite-3.40.1 | 1.2 MB | 1 | 1%  pip-22.3.1 | 2.7 MB | 1 | 1% xz-5.2.10 | 429 KB | 3 | 4%  sqlite-3.40.1 | 1.2 MB | 2 | 3%  ca-certificates-2023 | 120 KB | #3 | 13%  xz-5.2.10 | 429 KB | 7 | 7%  certifi-2022.12.7 | 150 KB | ###2 | 32%  pip-22.3.1 | 2.7 MB | 1 | 2% sqlite-3.40.1 | 1.2 MB | 4 | 4%  pip-22.3.1 | 2.7 MB | 2 | 2% xz-5.2.10 | 429 KB | #1 | 11%  certifi-2022.12.7 | 150 KB | #####3 | 53%  sqlite-3.40.1 | 1.2 MB | 5 | 5%  xz-5.2.10 | 429 KB | #4 | 15%  ca-certificates-2023 | 120 KB | #### | 40%  pip-22.3.1 | 2.7 MB | 2 | 3% ca-certificates-2023 | 120 KB | #####3 | 53%  xz-5.2.10 | 429 KB | #8 | 19%  certifi-2022.12.7 | 150 KB | ######4 | 64%  pip-22.3.1 | 2.7 MB | 3 | 3% sqlite-3.40.1 | 1.2 MB | 6 | 7%  certifi-2022.12.7 | 150 KB | ########5 | 85%  xz-5.2.10 | 429 KB | ##2 | 22%  sqlite-3.40.1 | 1.2 MB | 9 | 9%  xz-5.2.10 | 429 KB | ##6 | 26%  ca-certificates-2023 | 120 KB | ######## | 80%  ca-certificates-2023 | 120 KB | #########3 | 93%  sqlite-3.40.1 | 1.2 MB | # | 11%  xz-5.2.10 | 429 KB | ##9 | 30%  certifi-2022.12.7 | 150 KB | #########6 | 96%  pip-22.3.1 | 2.7 MB | 4 | 4% sqlite-3.40.1 | 1.2 MB | #2 | 12%  ca-certificates-2023 | 120 KB | ########## | 100%  xz-5.2.10 | 429 KB | ###3 | 34%  sqlite-3.40.1 | 1.2 MB | #3 | 13%  pip-22.3.1 | 2.7 MB | 6 | 6% xz-5.2.10 | 429 KB | #### | 41%  pip-22.3.1 | 2.7 MB | 6 | 7% certifi-2022.12.7 | 150 KB | ########## | 100%  setuptools-65.6.3 | 1.1 MB | 1 | 1%  sqlite-3.40.1 | 1.2 MB | #6 | 16%  pip-22.3.1 | 2.7 MB | 7 | 7% xz-5.2.10 | 429 KB | ####4 | 45%  sqlite-3.40.1 | 1.2 MB | #7 | 17%  xz-5.2.10 | 429 KB | #####2 | 52%  pip-22.3.1 | 2.7 MB | 8 | 8% setuptools-65.6.3 | 1.1 MB | 4 | 4%  python-3.8.16 | 23.9 MB | | 0%  setuptools-65.6.3 | 1.1 MB | 5 | 5%  sqlite-3.40.1 | 1.2 MB | #8 | 19%  python-3.8.16 | 23.9 MB | | 0%  pip-22.3.1 | 2.7 MB | 9 | 9% xz-5.2.10 | 429 KB | #####5 | 56%  sqlite-3.40.1 | 1.2 MB | ## | 20%  pip-22.3.1 | 2.7 MB | 9 | 10% sqlite-3.40.1 | 1.2 MB | ##1 | 21%  xz-5.2.10 | 429 KB | ######3 | 63%  pip-22.3.1 | 2.7 MB | # | 10% setuptools-65.6.3 | 1.1 MB | 8 | 8%  python-3.8.16 | 23.9 MB | | 0%  setuptools-65.6.3 | 1.1 MB | 9 | 10%  sqlite-3.40.1 | 1.2 MB | ##2 | 23%  xz-5.2.10 | 429 KB | ######7 | 67%  pip-22.3.1 | 2.7 MB | # | 11% xz-5.2.10 | 429 KB | #######4 | 75%  setuptools-65.6.3 | 1.1 MB | #2 | 12%  sqlite-3.40.1 | 1.2 MB | ##4 | 24%  pip-22.3.1 | 2.7 MB | #1 | 12% python-3.8.16 | 23.9 MB | | 0%  setuptools-65.6.3 | 1.1 MB | #3 | 14%  pip-22.3.1 | 2.7 MB | #2 | 12% xz-5.2.10 | 429 KB | #######8 | 78%  python-3.8.16 | 23.9 MB | | 0%  sqlite-3.40.1 | 1.2 MB | ##6 | 27%  pip-22.3.1 | 2.7 MB | #2 | 13% xz-5.2.10 | 429 KB | ########5 | 86%  python-3.8.16 | 23.9 MB | | 1%  setuptools-65.6.3 | 1.1 MB | #6 | 16%  sqlite-3.40.1 | 1.2 MB | ##8 | 28%  pip-22.3.1 | 2.7 MB | #3 | 13% setuptools-65.6.3 | 1.1 MB | #7 | 18%  python-3.8.16 | 23.9 MB | | 1%  sqlite-3.40.1 | 1.2 MB | ##9 | 29%  setuptools-65.6.3 | 1.1 MB | #9 | 19%  pip-22.3.1 | 2.7 MB | #3 | 14% xz-5.2.10 | 429 KB | ########9 | 89%  python-3.8.16 | 23.9 MB | | 1%  pip-22.3.1 | 2.7 MB | #4 | 14% sqlite-3.40.1 | 1.2 MB | ### | 31%  xz-5.2.10 | 429 KB | #########6 | 97%  setuptools-65.6.3 | 1.1 MB | ## | 20%  python-3.8.16 | 23.9 MB | | 1%  python-3.8.16 | 23.9 MB | | 1%  pip-22.3.1 | 2.7 MB | #4 | 15% sqlite-3.40.1 | 1.2 MB | ###2 | 32%  xz-5.2.10 | 429 KB | ########## | 100%  setuptools-65.6.3 | 1.1 MB | ##1 | 22%  python-3.8.16 | 23.9 MB | | 1%  pip-22.3.1 | 2.7 MB | #6 | 16% sqlite-3.40.1 | 1.2 MB | ###4 | 35%  python-3.8.16 | 23.9 MB | | 1%  setuptools-65.6.3 | 1.1 MB | ##4 | 25%  pip-22.3.1 | 2.7 MB | #6 | 17% sqlite-3.40.1 | 1.2 MB | ###6 | 36%  python-3.8.16 | 23.9 MB | | 1%  setuptools-65.6.3 | 1.1 MB | ##5 | 26%  ncurses-6.4 | 914 KB | 1 | 2%  pip-22.3.1 | 2.7 MB | #7 | 17% sqlite-3.40.1 | 1.2 MB | ###7 | 38%  python-3.8.16 | 23.9 MB | 1 | 1%  setuptools-65.6.3 | 1.1 MB | ##7 | 27%  pip-22.3.1 | 2.7 MB | #7 | 18% ncurses-6.4 | 914 KB | 3 | 4%  python-3.8.16 | 23.9 MB | 1 | 1%  sqlite-3.40.1 | 1.2 MB | ###8 | 39%  pip-22.3.1 | 2.7 MB | #8 | 18% setuptools-65.6.3 | 1.1 MB | ##8 | 29%  ncurses-6.4 | 914 KB | 5 | 5%  sqlite-3.40.1 | 1.2 MB | #### | 40%  python-3.8.16 | 23.9 MB | 1 | 1%  setuptools-65.6.3 | 1.1 MB | ### | 30%  pip-22.3.1 | 2.7 MB | #9 | 19% ncurses-6.4 | 914 KB | 7 | 7%  python-3.8.16 | 23.9 MB | 1 | 1%  sqlite-3.40.1 | 1.2 MB | ####1 | 42%  setuptools-65.6.3 | 1.1 MB | ###1 | 31%  pip-22.3.1 | 2.7 MB | #9 | 20% ncurses-6.4 | 914 KB | 8 | 9%  python-3.8.16 | 23.9 MB | 1 | 1%  sqlite-3.40.1 | 1.2 MB | ####2 | 43%  setuptools-65.6.3 | 1.1 MB | ###2 | 33%  ncurses-6.4 | 914 KB | # | 11%  pip-22.3.1 | 2.7 MB | ## | 20% sqlite-3.40.1 | 1.2 MB | ####4 | 44%  python-3.8.16 | 23.9 MB | 1 | 1%  setuptools-65.6.3 | 1.1 MB | ###4 | 34%  pip-22.3.1 | 2.7 MB | ## | 21% ncurses-6.4 | 914 KB | #2 | 12%  python-3.8.16 | 23.9 MB | 1 | 1%  sqlite-3.40.1 | 1.2 MB | ####5 | 46%  setuptools-65.6.3 | 1.1 MB | ###5 | 36%  pip-22.3.1 | 2.7 MB | ##1 | 21% ncurses-6.4 | 914 KB | #4 | 14%  sqlite-3.40.1 | 1.2 MB | ####6 | 47%  setuptools-65.6.3 | 1.1 MB | ###6 | 37%  pip-22.3.1 | 2.7 MB | ##1 | 22% ncurses-6.4 | 914 KB | #5 | 16%  python-3.8.16 | 23.9 MB | 1 | 2%  sqlite-3.40.1 | 1.2 MB | ####8 | 48%  python-3.8.16 | 23.9 MB | 1 | 2%  setuptools-65.6.3 | 1.1 MB | ###8 | 38%  ncurses-6.4 | 914 KB | #7 | 18%  pip-22.3.1 | 2.7 MB | ##2 | 22% setuptools-65.6.3 | 1.1 MB | ###9 | 40%  ncurses-6.4 | 914 KB | #9 | 19%  pip-22.3.1 | 2.7 MB | ##3 | 23% sqlite-3.40.1 | 1.2 MB | ####9 | 50%  python-3.8.16 | 23.9 MB | 1 | 2%  pip-22.3.1 | 2.7 MB | ##3 | 24% setuptools-65.6.3 | 1.1 MB | #### | 41%  sqlite-3.40.1 | 1.2 MB | ##### | 51%  ncurses-6.4 | 914 KB | ##1 | 21%  python-3.8.16 | 23.9 MB | 1 | 2%  setuptools-65.6.3 | 1.1 MB | ####2 | 42%  ncurses-6.4 | 914 KB | ##2 | 23%  pip-22.3.1 | 2.7 MB | ##4 | 24% sqlite-3.40.1 | 1.2 MB | #####2 | 52%  python-3.8.16 | 23.9 MB | 1 | 2%  setuptools-65.6.3 | 1.1 MB | ####3 | 44%  pip-22.3.1 | 2.7 MB | ##4 | 25% ncurses-6.4 | 914 KB | ##4 | 25%  sqlite-3.40.1 | 1.2 MB | #####3 | 54%  setuptools-65.6.3 | 1.1 MB | ####5 | 45%  python-3.8.16 | 23.9 MB | 1 | 2%  pip-22.3.1 | 2.7 MB | ##5 | 25% ncurses-6.4 | 914 KB | ##6 | 26%  sqlite-3.40.1 | 1.2 MB | #####4 | 55%  setuptools-65.6.3 | 1.1 MB | ####6 | 46%  python-3.8.16 | 23.9 MB | 1 | 2%  ncurses-6.4 | 914 KB | ##8 | 28%  pip-22.3.1 | 2.7 MB | ##5 | 26% sqlite-3.40.1 | 1.2 MB | #####6 | 56%  setuptools-65.6.3 | 1.1 MB | ####7 | 48%  python-3.8.16 | 23.9 MB | 1 | 2%  ncurses-6.4 | 914 KB | ##9 | 30%  pip-22.3.1 | 2.7 MB | ##6 | 27% sqlite-3.40.1 | 1.2 MB | #####7 | 58%  setuptools-65.6.3 | 1.1 MB | ####9 | 49%  ncurses-6.4 | 914 KB | ###1 | 32%  python-3.8.16 | 23.9 MB | 2 | 2%  pip-22.3.1 | 2.7 MB | ##7 | 27% sqlite-3.40.1 | 1.2 MB | #####8 | 59%  setuptools-65.6.3 | 1.1 MB | ##### | 51%  ncurses-6.4 | 914 KB | ###3 | 33%  python-3.8.16 | 23.9 MB | 2 | 2%  pip-22.3.1 | 2.7 MB | ##7 | 28% sqlite-3.40.1 | 1.2 MB | ###### | 60%  setuptools-65.6.3 | 1.1 MB | #####1 | 52%  python-3.8.16 | 23.9 MB | 2 | 2%  ncurses-6.4 | 914 KB | ###5 | 35%  pip-22.3.1 | 2.7 MB | ##8 | 28% setuptools-65.6.3 | 1.1 MB | #####3 | 53%  sqlite-3.40.1 | 1.2 MB | ######1 | 62%  ncurses-6.4 | 914 KB | ###6 | 37%  python-3.8.16 | 23.9 MB | 2 | 2%  setuptools-65.6.3 | 1.1 MB | #####4 | 55%  pip-22.3.1 | 2.7 MB | ##8 | 29% sqlite-3.40.1 | 1.2 MB | ######3 | 63%  ncurses-6.4 | 914 KB | ###8 | 39%  python-3.8.16 | 23.9 MB | 2 | 2%  setuptools-65.6.3 | 1.1 MB | #####6 | 56%  sqlite-3.40.1 | 1.2 MB | ######4 | 64%  pip-22.3.1 | 2.7 MB | ##9 | 29% ncurses-6.4 | 914 KB | #### | 40%  python-3.8.16 | 23.9 MB | 2 | 2%  setuptools-65.6.3 | 1.1 MB | #####7 | 57%  pip-22.3.1 | 2.7 MB | ##9 | 30% sqlite-3.40.1 | 1.2 MB | ######5 | 66%  ncurses-6.4 | 914 KB | ####2 | 42%  python-3.8.16 | 23.9 MB | 2 | 2%  setuptools-65.6.3 | 1.1 MB | #####8 | 59%  pip-22.3.1 | 2.7 MB | ### | 31% sqlite-3.40.1 | 1.2 MB | ######7 | 67%  ncurses-6.4 | 914 KB | ####3 | 44%  python-3.8.16 | 23.9 MB | 2 | 2%  setuptools-65.6.3 | 1.1 MB | ###### | 60%  ncurses-6.4 | 914 KB | ####5 | 46%  pip-22.3.1 | 2.7 MB | ###1 | 31% python-3.8.16 | 23.9 MB | 2 | 3%  sqlite-3.40.1 | 1.2 MB | ######8 | 68%  setuptools-65.6.3 | 1.1 MB | ######1 | 61%  pip-22.3.1 | 2.7 MB | ###1 | 32% ncurses-6.4 | 914 KB | ####7 | 47%  setuptools-65.6.3 | 1.1 MB | ######2 | 63%  python-3.8.16 | 23.9 MB | 2 | 3%  sqlite-3.40.1 | 1.2 MB | ######9 | 70%  ncurses-6.4 | 914 KB | ####9 | 49%  python-3.8.16 | 23.9 MB | 2 | 3%  pip-22.3.1 | 2.7 MB | ###2 | 32% setuptools-65.6.3 | 1.1 MB | ######4 | 64%  ncurses-6.4 | 914 KB | ##### | 51%  sqlite-3.40.1 | 1.2 MB | #######1 | 71%  python-3.8.16 | 23.9 MB | 2 | 3%  setuptools-65.6.3 | 1.1 MB | ######5 | 66%  ncurses-6.4 | 914 KB | #####2 | 53%  pip-22.3.1 | 2.7 MB | ###2 | 33% python-3.8.16 | 23.9 MB | 2 | 3%  sqlite-3.40.1 | 1.2 MB | #######2 | 72%  python-3.8.16 | 23.9 MB | 2 | 3%  ncurses-6.4 | 914 KB | #####4 | 54%  setuptools-65.6.3 | 1.1 MB | ######6 | 67%  pip-22.3.1 | 2.7 MB | ###3 | 33% sqlite-3.40.1 | 1.2 MB | #######3 | 74%  python-3.8.16 | 23.9 MB | 2 | 3%  setuptools-65.6.3 | 1.1 MB | ######8 | 68%  ncurses-6.4 | 914 KB | #####6 | 56%  pip-22.3.1 | 2.7 MB | ###4 | 34% python-3.8.16 | 23.9 MB | 3 | 3%  sqlite-3.40.1 | 1.2 MB | #######5 | 75%  ncurses-6.4 | 914 KB | #####7 | 58%  setuptools-65.6.3 | 1.1 MB | ######9 | 70%  pip-22.3.1 | 2.7 MB | ###4 | 35% python-3.8.16 | 23.9 MB | 3 | 3%  ncurses-6.4 | 914 KB | #####9 | 60%  sqlite-3.40.1 | 1.2 MB | #######6 | 76%  setuptools-65.6.3 | 1.1 MB | #######1 | 71%  python-3.8.16 | 23.9 MB | 3 | 3%  pip-22.3.1 | 2.7 MB | ###5 | 35% ncurses-6.4 | 914 KB | ######1 | 61%  setuptools-65.6.3 | 1.1 MB | #######2 | 72%  sqlite-3.40.1 | 1.2 MB | #######7 | 78%  python-3.8.16 | 23.9 MB | 3 | 3%  pip-22.3.1 | 2.7 MB | ###5 | 36% ncurses-6.4 | 914 KB | ######3 | 63%  python-3.8.16 | 23.9 MB | 3 | 3%  setuptools-65.6.3 | 1.1 MB | #######3 | 74%  sqlite-3.40.1 | 1.2 MB | #######9 | 79%  pip-22.3.1 | 2.7 MB | ###6 | 36% ncurses-6.4 | 914 KB | ######4 | 65%  python-3.8.16 | 23.9 MB | 3 | 3%  setuptools-65.6.3 | 1.1 MB | #######5 | 75%  sqlite-3.40.1 | 1.2 MB | ######## | 80%  python-3.8.16 | 23.9 MB | 3 | 3%  ncurses-6.4 | 914 KB | ######6 | 67%  pip-22.3.1 | 2.7 MB | ###6 | 37% setuptools-65.6.3 | 1.1 MB | #######6 | 77%  sqlite-3.40.1 | 1.2 MB | ########1 | 82%  ncurses-6.4 | 914 KB | ######8 | 68%  python-3.8.16 | 23.9 MB | 3 | 3%  pip-22.3.1 | 2.7 MB | ###7 | 37% setuptools-65.6.3 | 1.1 MB | #######7 | 78%  ncurses-6.4 | 914 KB | ####### | 70%  python-3.8.16 | 23.9 MB | 3 | 4%  pip-22.3.1 | 2.7 MB | ###8 | 38% sqlite-3.40.1 | 1.2 MB | ########3 | 83%  setuptools-65.6.3 | 1.1 MB | #######9 | 79%  python-3.8.16 | 23.9 MB | 3 | 4%  ncurses-6.4 | 914 KB | #######1 | 72%  sqlite-3.40.1 | 1.2 MB | ########4 | 84%  pip-22.3.1 | 2.7 MB | ###8 | 39% python-3.8.16 | 23.9 MB | 3 | 4%  setuptools-65.6.3 | 1.1 MB | ######## | 81%  ncurses-6.4 | 914 KB | #######3 | 74%  sqlite-3.40.1 | 1.2 MB | ########5 | 86%  pip-22.3.1 | 2.7 MB | ###9 | 39% python-3.8.16 | 23.9 MB | 3 | 4%  ncurses-6.4 | 914 KB | #######5 | 75%  setuptools-65.6.3 | 1.1 MB | ########1 | 82%  python-3.8.16 | 23.9 MB | 3 | 4%  sqlite-3.40.1 | 1.2 MB | ########7 | 87%  ncurses-6.4 | 914 KB | #######7 | 77%  pip-22.3.1 | 2.7 MB | ###9 | 40% setuptools-65.6.3 | 1.1 MB | ########3 | 83%  python-3.8.16 | 23.9 MB | 3 | 4%  ncurses-6.4 | 914 KB | #######8 | 79%  setuptools-65.6.3 | 1.1 MB | ########4 | 85%  pip-22.3.1 | 2.7 MB | #### | 40% sqlite-3.40.1 | 1.2 MB | ########8 | 88%  python-3.8.16 | 23.9 MB | 3 | 4%  ncurses-6.4 | 914 KB | ######## | 81%  setuptools-65.6.3 | 1.1 MB | ########6 | 86%  pip-22.3.1 | 2.7 MB | #### | 41% python-3.8.16 | 23.9 MB | 3 | 4%  sqlite-3.40.1 | 1.2 MB | ########9 | 90%  ncurses-6.4 | 914 KB | ########2 | 82%  setuptools-65.6.3 | 1.1 MB | ########7 | 87%  python-3.8.16 | 23.9 MB | 4 | 4%  pip-22.3.1 | 2.7 MB | ####1 | 42% ncurses-6.4 | 914 KB | ########4 | 84%  sqlite-3.40.1 | 1.2 MB | #########1 | 91%  python-3.8.16 | 23.9 MB | 4 | 4%  setuptools-65.6.3 | 1.1 MB | ########8 | 89%  pip-22.3.1 | 2.7 MB | ####2 | 42% ncurses-6.4 | 914 KB | ########5 | 86%  sqlite-3.40.1 | 1.2 MB | #########2 | 93%  python-3.8.16 | 23.9 MB | 4 | 4%  setuptools-65.6.3 | 1.1 MB | ######### | 90%  ncurses-6.4 | 914 KB | ########7 | 88%  python-3.8.16 | 23.9 MB | 4 | 4%  pip-22.3.1 | 2.7 MB | ####2 | 43% sqlite-3.40.1 | 1.2 MB | #########3 | 94%  setuptools-65.6.3 | 1.1 MB | #########1 | 92%  ncurses-6.4 | 914 KB | ########9 | 89%  python-3.8.16 | 23.9 MB | 4 | 4%  pip-22.3.1 | 2.7 MB | ####3 | 43% python-3.8.16 | 23.9 MB | 4 | 4%  setuptools-65.6.3 | 1.1 MB | #########2 | 93%  ncurses-6.4 | 914 KB | #########1 | 91%  sqlite-3.40.1 | 1.2 MB | #########5 | 95%  pip-22.3.1 | 2.7 MB | ####3 | 44% ncurses-6.4 | 914 KB | #########2 | 93%  setuptools-65.6.3 | 1.1 MB | #########4 | 94%  python-3.8.16 | 23.9 MB | 4 | 4%  sqlite-3.40.1 | 1.2 MB | #########6 | 97%  pip-22.3.1 | 2.7 MB | ####4 | 44% python-3.8.16 | 23.9 MB | 4 | 5%  ncurses-6.4 | 914 KB | #########4 | 95%  setuptools-65.6.3 | 1.1 MB | #########5 | 96%  python-3.8.16 | 23.9 MB | 4 | 5%  sqlite-3.40.1 | 1.2 MB | #########7 | 98%  ncurses-6.4 | 914 KB | #########6 | 96%  pip-22.3.1 | 2.7 MB | ####4 | 45% setuptools-65.6.3 | 1.1 MB | #########7 | 97%  sqlite-3.40.1 | 1.2 MB | #########9 | 99%  python-3.8.16 | 23.9 MB | 4 | 5%  ncurses-6.4 | 914 KB | #########8 | 98%  setuptools-65.6.3 | 1.1 MB | #########8 | 98%  python-3.8.16 | 23.9 MB | 4 | 5%  ncurses-6.4 | 914 KB | #########9 | 100%  pip-22.3.1 | 2.7 MB | ####5 | 46% sqlite-3.40.1 | 1.2 MB | ########## | 100%  sqlite-3.40.1 | 1.2 MB | ########## | 100%  pip-22.3.1 | 2.7 MB | ####6 | 47% python-3.8.16 | 23.9 MB | 4 | 5%  setuptools-65.6.3 | 1.1 MB | ########## | 100%  setuptools-65.6.3 | 1.1 MB | ########## | 100%  pip-22.3.1 | 2.7 MB | ####8 | 48% python-3.8.16 | 23.9 MB | 5 | 5%  ncurses-6.4 | 914 KB | ########## | 100%  pip-22.3.1 | 2.7 MB | #####4 | 55% python-3.8.16 | 23.9 MB | 5 | 6%  pip-22.3.1 | 2.7 MB | #####6 | 57% python-3.8.16 | 23.9 MB | 6 | 6%  pip-22.3.1 | 2.7 MB | #####8 | 58% python-3.8.16 | 23.9 MB | 6 | 6%  pip-22.3.1 | 2.7 MB | #####9 | 59% pip-22.3.1 | 2.7 MB | ###### | 61% python-3.8.16 | 23.9 MB | 6 | 6%  pip-22.3.1 | 2.7 MB | ######1 | 62% python-3.8.16 | 23.9 MB | 6 | 6%  pip-22.3.1 | 2.7 MB | ######2 | 63% pip-22.3.1 | 2.7 MB | ######3 | 64% python-3.8.16 | 23.9 MB | 6 | 7%  pip-22.3.1 | 2.7 MB | ######5 | 65% python-3.8.16 | 23.9 MB | 6 | 7%  pip-22.3.1 | 2.7 MB | ######6 | 66% pip-22.3.1 | 2.7 MB | ######7 | 67% python-3.8.16 | 23.9 MB | 6 | 7%  pip-22.3.1 | 2.7 MB | ######8 | 69% pip-22.3.1 | 2.7 MB | ######9 | 70% python-3.8.16 | 23.9 MB | 6 | 7%  pip-22.3.1 | 2.7 MB | ####### | 71% python-3.8.16 | 23.9 MB | 7 | 7%  pip-22.3.1 | 2.7 MB | #######2 | 72% pip-22.3.1 | 2.7 MB | #######3 | 73% python-3.8.16 | 23.9 MB | 7 | 7%  pip-22.3.1 | 2.7 MB | #######4 | 74% python-3.8.16 | 23.9 MB | 7 | 7%  pip-22.3.1 | 2.7 MB | #######5 | 76% pip-22.3.1 | 2.7 MB | #######6 | 77% python-3.8.16 | 23.9 MB | 7 | 7%  pip-22.3.1 | 2.7 MB | #######7 | 78% python-3.8.16 | 23.9 MB | 7 | 8%  pip-22.3.1 | 2.7 MB | #######8 | 79% pip-22.3.1 | 2.7 MB | ######## | 80% python-3.8.16 | 23.9 MB | 7 | 8%  pip-22.3.1 | 2.7 MB | ########1 | 81% pip-22.3.1 | 2.7 MB | ########2 | 82% python-3.8.16 | 23.9 MB | 7 | 8%  pip-22.3.1 | 2.7 MB | ########3 | 84% python-3.8.16 | 23.9 MB | 7 | 8%  pip-22.3.1 | 2.7 MB | ########4 | 85% pip-22.3.1 | 2.7 MB | ########5 | 86% python-3.8.16 | 23.9 MB | 8 | 8%  pip-22.3.1 | 2.7 MB | ########7 | 87% pip-22.3.1 | 2.7 MB | ########8 | 89% pip-22.3.1 | 2.7 MB | ######### | 91% pip-22.3.1 | 2.7 MB | #########2 | 92% python-3.8.16 | 23.9 MB | 8 | 8%  python-3.8.16 | 23.9 MB | 8 | 8%  pip-22.3.1 | 2.7 MB | #########3 | 94% python-3.8.16 | 23.9 MB | 8 | 8%  pip-22.3.1 | 2.7 MB | #########5 | 95% python-3.8.16 | 23.9 MB | 8 | 9%  pip-22.3.1 | 2.7 MB | #########6 | 96% pip-22.3.1 | 2.7 MB | #########7 | 97% python-3.8.16 | 23.9 MB | 8 | 9%  pip-22.3.1 | 2.7 MB | #########8 | 99% python-3.8.16 | 23.9 MB | 8 | 9%  python-3.8.16 | 23.9 MB | 8 | 9%  pip-22.3.1 | 2.7 MB | ########## | 100% pip-22.3.1 | 2.7 MB | ########## | 100% python-3.8.16 | 23.9 MB | 9 | 10%  python-3.8.16 | 23.9 MB | 9 | 10%  python-3.8.16 | 23.9 MB | # | 10%  python-3.8.16 | 23.9 MB | # | 10%  python-3.8.16 | 23.9 MB | # | 10%  python-3.8.16 | 23.9 MB | # | 10%  python-3.8.16 | 23.9 MB | # | 11%  python-3.8.16 | 23.9 MB | # | 11%  python-3.8.16 | 23.9 MB | # | 11%  python-3.8.16 | 23.9 MB | #1 | 11%  python-3.8.16 | 23.9 MB | #1 | 11%  python-3.8.16 | 23.9 MB | #1 | 12%  python-3.8.16 | 23.9 MB | #1 | 12%  python-3.8.16 | 23.9 MB | #1 | 12%  python-3.8.16 | 23.9 MB | #2 | 12%  python-3.8.16 | 23.9 MB | #2 | 12%  python-3.8.16 | 23.9 MB | #2 | 13%  python-3.8.16 | 23.9 MB | #2 | 13%  python-3.8.16 | 23.9 MB | #2 | 13%  python-3.8.16 | 23.9 MB | #3 | 13%  python-3.8.16 | 23.9 MB | #3 | 13%  python-3.8.16 | 23.9 MB | 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#########7 | 98%  python-3.8.16 | 23.9 MB | #########7 | 98%  python-3.8.16 | 23.9 MB | #########8 | 98%  python-3.8.16 | 23.9 MB | #########8 | 99%  python-3.8.16 | 23.9 MB | #########8 | 99%  python-3.8.16 | 23.9 MB | #########9 | 99%  python-3.8.16 | 23.9 MB | #########9 | 99%  python-3.8.16 | 23.9 MB | #########9 | 100%  python-3.8.16 | 23.9 MB | #########9 | 100%  python-3.8.16 | 23.9 MB | ########## | 100%  python-3.8.16 | 23.9 MB | ########## | 100%         Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # # To activate this environment, use # # $ conda activate venv_sct # # To deactivate an active environment, use # # $ conda deactivate Validating that conda environment can be activated... Collecting package metadata (current_repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 22.11.1 latest version: 23.1.0 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.1.0 ## Package Plan ## environment location: /home/maryam/sct_5.8/python/envs/venv_sct added / updated specs: - libstdcxx-ng The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2022.12.7 | ha878542_0 143 KB conda-forge certifi-2022.12.7 | pyhd8ed1ab_0 147 KB conda-forge libstdcxx-ng-12.2.0 | h46fd767_19 4.3 MB conda-forge ------------------------------------------------------------ Total: 4.6 MB The following packages will be UPDATED: libstdcxx-ng pkgs/main::libstdcxx-ng-11.2.0-h12345~ --> conda-forge::libstdcxx-ng-12.2.0-h46fd767_19 The following packages will be SUPERSEDED by a higher-priority channel: ca-certificates pkgs/main::ca-certificates-2023.01.10~ --> conda-forge::ca-certificates-2022.12.7-ha878542_0 certifi pkgs/main/linux-64::certifi-2022.12.7~ --> conda-forge/noarch::certifi-2022.12.7-pyhd8ed1ab_0 Downloading and Extracting Packages certifi-2022.12.7 | 147 KB | | 0% ca-certificates-2022 | 143 KB | | 0%  libstdcxx-ng-12.2.0 | 4.3 MB | | 0%  ca-certificates-2022 | 143 KB | #1 | 11%  certifi-2022.12.7 | 147 KB | # | 11% libstdcxx-ng-12.2.0 | 4.3 MB | | 0%  ca-certificates-2022 | 143 KB | ##2 | 22%  certifi-2022.12.7 | 147 KB | ##1 | 22% libstdcxx-ng-12.2.0 | 4.3 MB | | 1%  ca-certificates-2022 | 143 KB | ###3 | 34%  certifi-2022.12.7 | 147 KB | ###2 | 33% libstdcxx-ng-12.2.0 | 4.3 MB | 1 | 1%  ca-certificates-2022 | 143 KB | ####4 | 45%  certifi-2022.12.7 | 147 KB | ####3 | 43% libstdcxx-ng-12.2.0 | 4.3 MB | 1 | 2%  certifi-2022.12.7 | 147 KB | #####4 | 54% ca-certificates-2022 | 143 KB | ######7 | 67%  certifi-2022.12.7 | 147 KB | ######5 | 65% libstdcxx-ng-12.2.0 | 4.3 MB | 2 | 2%  ca-certificates-2022 | 143 KB | ########9 | 90%  certifi-2022.12.7 | 147 KB | #######6 | 76% libstdcxx-ng-12.2.0 | 4.3 MB | 2 | 3%  certifi-2022.12.7 | 147 KB | #########7 | 98% libstdcxx-ng-12.2.0 | 4.3 MB | 3 | 3%  libstdcxx-ng-12.2.0 | 4.3 MB | 4 | 5%  ca-certificates-2022 | 143 KB | ########## | 100%  ca-certificates-2022 | 143 KB | ########## | 100%  libstdcxx-ng-12.2.0 | 4.3 MB | 5 | 6%  certifi-2022.12.7 | 147 KB | ########## | 100% libstdcxx-ng-12.2.0 | 4.3 MB | 6 | 7%  libstdcxx-ng-12.2.0 | 4.3 MB | 8 | 8%  libstdcxx-ng-12.2.0 | 4.3 MB | 9 | 9%  libstdcxx-ng-12.2.0 | 4.3 MB | # | 10%  libstdcxx-ng-12.2.0 | 4.3 MB | #1 | 11%  libstdcxx-ng-12.2.0 | 4.3 MB | #2 | 12%  libstdcxx-ng-12.2.0 | 4.3 MB | #3 | 13%  libstdcxx-ng-12.2.0 | 4.3 MB | #4 | 15%  libstdcxx-ng-12.2.0 | 4.3 MB | #5 | 16%  libstdcxx-ng-12.2.0 | 4.3 MB | #6 | 17%  libstdcxx-ng-12.2.0 | 4.3 MB | #7 | 18%  libstdcxx-ng-12.2.0 | 4.3 MB | #8 | 19%  libstdcxx-ng-12.2.0 | 4.3 MB | ## | 20%  libstdcxx-ng-12.2.0 | 4.3 MB | ##1 | 21%  libstdcxx-ng-12.2.0 | 4.3 MB | ##2 | 22%  libstdcxx-ng-12.2.0 | 4.3 MB | ##3 | 23%  libstdcxx-ng-12.2.0 | 4.3 MB | ##4 | 24%  libstdcxx-ng-12.2.0 | 4.3 MB | ##5 | 25%  libstdcxx-ng-12.2.0 | 4.3 MB | ##6 | 27%  libstdcxx-ng-12.2.0 | 4.3 MB | ##7 | 28%  libstdcxx-ng-12.2.0 | 4.3 MB | ##8 | 29%  libstdcxx-ng-12.2.0 | 4.3 MB | ##9 | 30%  libstdcxx-ng-12.2.0 | 4.3 MB | ### | 31%  libstdcxx-ng-12.2.0 | 4.3 MB | ###2 | 32%  libstdcxx-ng-12.2.0 | 4.3 MB | ###3 | 33%  libstdcxx-ng-12.2.0 | 4.3 MB | ###4 | 34%  libstdcxx-ng-12.2.0 | 4.3 MB | ###5 | 35%  libstdcxx-ng-12.2.0 | 4.3 MB | ###6 | 36%  libstdcxx-ng-12.2.0 | 4.3 MB | ###7 | 38%  libstdcxx-ng-12.2.0 | 4.3 MB | ###8 | 39%  libstdcxx-ng-12.2.0 | 4.3 MB | ###9 | 40%  libstdcxx-ng-12.2.0 | 4.3 MB | #### | 41%  libstdcxx-ng-12.2.0 | 4.3 MB | ####1 | 42%  libstdcxx-ng-12.2.0 | 4.3 MB | ####2 | 43%  libstdcxx-ng-12.2.0 | 4.3 MB | ####4 | 44%  libstdcxx-ng-12.2.0 | 4.3 MB | ####5 | 45%  libstdcxx-ng-12.2.0 | 4.3 MB | ####6 | 46%  libstdcxx-ng-12.2.0 | 4.3 MB | ####7 | 47%  libstdcxx-ng-12.2.0 | 4.3 MB | ####8 | 48%  libstdcxx-ng-12.2.0 | 4.3 MB | ####9 | 50%  libstdcxx-ng-12.2.0 | 4.3 MB | ##### | 51%  libstdcxx-ng-12.2.0 | 4.3 MB | #####1 | 52%  libstdcxx-ng-12.2.0 | 4.3 MB | #####2 | 53%  libstdcxx-ng-12.2.0 | 4.3 MB | #####3 | 54%  libstdcxx-ng-12.2.0 | 4.3 MB | #####5 | 55%  libstdcxx-ng-12.2.0 | 4.3 MB | #####6 | 56%  libstdcxx-ng-12.2.0 | 4.3 MB | #####7 | 57%  libstdcxx-ng-12.2.0 | 4.3 MB | #####8 | 58%  libstdcxx-ng-12.2.0 | 4.3 MB | #####9 | 59%  libstdcxx-ng-12.2.0 | 4.3 MB | ###### | 60%  libstdcxx-ng-12.2.0 | 4.3 MB | ######1 | 62%  libstdcxx-ng-12.2.0 | 4.3 MB | ######2 | 63%  libstdcxx-ng-12.2.0 | 4.3 MB | ######3 | 64%  libstdcxx-ng-12.2.0 | 4.3 MB | ######4 | 65%  libstdcxx-ng-12.2.0 | 4.3 MB | ######5 | 66%  libstdcxx-ng-12.2.0 | 4.3 MB | ######7 | 67%  libstdcxx-ng-12.2.0 | 4.3 MB | ######8 | 68%  libstdcxx-ng-12.2.0 | 4.3 MB | ######9 | 69%  libstdcxx-ng-12.2.0 | 4.3 MB | ####### | 70%  libstdcxx-ng-12.2.0 | 4.3 MB | #######1 | 71%  libstdcxx-ng-12.2.0 | 4.3 MB | #######2 | 72%  libstdcxx-ng-12.2.0 | 4.3 MB | #######3 | 74%  libstdcxx-ng-12.2.0 | 4.3 MB | #######4 | 75%  libstdcxx-ng-12.2.0 | 4.3 MB | #######5 | 76%  libstdcxx-ng-12.2.0 | 4.3 MB | #######6 | 77%  libstdcxx-ng-12.2.0 | 4.3 MB | #######7 | 78%  libstdcxx-ng-12.2.0 | 4.3 MB | #######9 | 79%  libstdcxx-ng-12.2.0 | 4.3 MB | ######## | 80%  libstdcxx-ng-12.2.0 | 4.3 MB | ########1 | 81%  libstdcxx-ng-12.2.0 | 4.3 MB | ########2 | 82%  libstdcxx-ng-12.2.0 | 4.3 MB | ########3 | 83%  libstdcxx-ng-12.2.0 | 4.3 MB | ########4 | 85%  libstdcxx-ng-12.2.0 | 4.3 MB | ########5 | 86%  libstdcxx-ng-12.2.0 | 4.3 MB | ########6 | 87%  libstdcxx-ng-12.2.0 | 4.3 MB | ########7 | 88%  libstdcxx-ng-12.2.0 | 4.3 MB | ########8 | 89%  libstdcxx-ng-12.2.0 | 4.3 MB | ########9 | 90%  libstdcxx-ng-12.2.0 | 4.3 MB | #########1 | 91%  libstdcxx-ng-12.2.0 | 4.3 MB | #########2 | 92%  libstdcxx-ng-12.2.0 | 4.3 MB | #########3 | 93%  libstdcxx-ng-12.2.0 | 4.3 MB | #########4 | 94%  libstdcxx-ng-12.2.0 | 4.3 MB | #########5 | 95%  libstdcxx-ng-12.2.0 | 4.3 MB | #########6 | 97%  libstdcxx-ng-12.2.0 | 4.3 MB | #########7 | 98%  libstdcxx-ng-12.2.0 | 4.3 MB | #########8 | 99%  libstdcxx-ng-12.2.0 | 4.3 MB | ########## | 100%  libstdcxx-ng-12.2.0 | 4.3 MB | ########## | 100%    Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Requirement already satisfied: pip!=21.2.* in ./python/envs/venv_sct/lib/python3.8/site-packages (22.3.1) Installing Python dependencies... Using requirements-freeze.txt (release installation) Looking in indexes: https://pypi.org/simple, https://download.pytorch.org/whl/cpu Ignoring msvc-runtime: markers 'sys_platform == "win32"' don't match your environment Collecting certifi Using cached certifi-2022.12.7-py3-none-any.whl (155 kB) Collecting absl-py==1.3.0 Using cached absl_py-1.3.0-py3-none-any.whl (124 kB) Collecting astor==0.8.1 Using cached astor-0.8.1-py2.py3-none-any.whl (27 kB) Collecting attrs==22.1.0 Using cached attrs-22.1.0-py2.py3-none-any.whl (58 kB) Collecting bids-validator==1.9.9 Using cached bids_validator-1.9.9-py2.py3-none-any.whl (21 kB) Collecting cachetools==5.2.0 Using cached cachetools-5.2.0-py3-none-any.whl (9.3 kB) Collecting certifi Using cached certifi-2022.9.24-py3-none-any.whl (161 kB) Collecting cffi==1.15.1 Using cached cffi-1.15.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (442 kB) Collecting charset-normalizer==2.1.1 Using cached charset_normalizer-2.1.1-py3-none-any.whl (39 kB) Collecting click==8.1.3 Using cached click-8.1.3-py3-none-any.whl (96 kB) Collecting colorama==0.4.6 Using cached colorama-0.4.6-py2.py3-none-any.whl (25 kB) Collecting coloredlogs==15.0.1 Using cached coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) Collecting commonmark==0.9.1 Using cached commonmark-0.9.1-py2.py3-none-any.whl (51 kB) Collecting contourpy==1.0.6 Using cached contourpy-1.0.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (295 kB) Collecting coverage==6.5.0 Using cached coverage-6.5.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (214 kB) Collecting cryptography==38.0.4 Using cached cryptography-38.0.4-cp36-abi3-manylinux_2_28_x86_64.whl (4.2 MB) Collecting csv-diff==1.1 Using cached csv_diff-1.1-py3-none-any.whl (12 kB) Collecting cycler==0.11.0 Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting Deprecated==1.2.13 Using cached Deprecated-1.2.13-py2.py3-none-any.whl (9.6 kB) Collecting dictdiffer==0.9.0 Using cached dictdiffer-0.9.0-py2.py3-none-any.whl (16 kB) Collecting dipy==1.5.0 Using cached dipy-1.5.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (7.9 MB) Collecting docker-pycreds==0.4.0 Using cached docker_pycreds-0.4.0-py2.py3-none-any.whl (9.0 kB) Collecting docopt==0.6.2 Using cached docopt-0.6.2-py2.py3-none-any.whl Collecting exceptiongroup==1.0.4 Using cached exceptiongroup-1.0.4-py3-none-any.whl (14 kB) Collecting flatbuffers==22.11.23 Using cached flatbuffers-22.11.23-py2.py3-none-any.whl (26 kB) Collecting fonttools==4.38.0 Using cached fonttools-4.38.0-py3-none-any.whl (965 kB) Collecting formulaic==0.3.4 Using cached formulaic-0.3.4-py3-none-any.whl (68 kB) Collecting gitdb==4.0.10 Using cached gitdb-4.0.10-py3-none-any.whl (62 kB) Collecting GitPython==3.1.29 Using cached GitPython-3.1.29-py3-none-any.whl (182 kB) Collecting google-auth==2.14.1 Using cached google_auth-2.14.1-py2.py3-none-any.whl (175 kB) Collecting google-auth-oauthlib==0.4.6 Using cached google_auth_oauthlib-0.4.6-py2.py3-none-any.whl (18 kB) Collecting grpcio==1.51.1 Using cached grpcio-1.51.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.8 MB) Collecting h5py==3.7.0 Using cached h5py-3.7.0-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (4.5 MB) Collecting humanfriendly==10.0 Using cached humanfriendly-10.0-py2.py3-none-any.whl (86 kB) Collecting humanize==4.4.0 Using cached humanize-4.4.0-py3-none-any.whl (106 kB) Collecting idna==3.4 Using cached idna-3.4-py3-none-any.whl (61 kB) Collecting imageio==2.22.4 Using cached imageio-2.22.4-py3-none-any.whl (3.4 MB) Collecting importlib-metadata==5.1.0 Using cached importlib_metadata-5.1.0-py3-none-any.whl (21 kB) Collecting iniconfig==1.1.1 Using cached iniconfig-1.1.1-py2.py3-none-any.whl (5.0 kB) Collecting interface-meta==1.3.0 Using cached interface_meta-1.3.0-py3-none-any.whl (14 kB) Collecting ivadomed==2.9.7 Using cached ivadomed-2.9.7-py3-none-any.whl (231 kB) Collecting joblib==1.2.0 Using cached joblib-1.2.0-py3-none-any.whl (297 kB) Collecting kiwisolver==1.4.4 Using cached kiwisolver-1.4.4-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.2 MB) Collecting loguru==0.6.0 Using cached loguru-0.6.0-py3-none-any.whl (58 kB) Collecting lxml==4.9.1 Using cached lxml-4.9.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (6.9 MB) Collecting Markdown==3.4.1 Using cached Markdown-3.4.1-py3-none-any.whl (93 kB) Collecting MarkupSafe==2.1.1 Using cached MarkupSafe-2.1.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) Collecting matplotlib==3.6.2 Using cached matplotlib-3.6.2-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (9.4 MB) Collecting mpmath==1.2.1 Using cached mpmath-1.2.1-py3-none-any.whl (532 kB) Collecting networkx==2.8.8 Using cached networkx-2.8.8-py3-none-any.whl (2.0 MB) Collecting neurite==0.2 Using cached neurite-0.2-py3-none-any.whl (108 kB) Collecting nibabel==3.2.2 Using cached nibabel-3.2.2-py3-none-any.whl (3.3 MB) Collecting nilearn==0.9.2 Using cached nilearn-0.9.2-py3-none-any.whl (9.6 MB) Collecting num2words==0.5.12 Using cached num2words-0.5.12-py3-none-any.whl (125 kB) Collecting numpy==1.23.5 Using cached numpy-1.23.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.1 MB) Collecting oauthlib==3.2.2 Using cached oauthlib-3.2.2-py3-none-any.whl (151 kB) Collecting onnxruntime==1.13.1 Using cached onnxruntime-1.13.1-cp38-cp38-manylinux_2_27_x86_64.whl (4.5 MB) Collecting packaging==21.3 Using cached packaging-21.3-py3-none-any.whl (40 kB) Collecting pandas==1.4.4 Using cached pandas-1.4.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (11.7 MB) Collecting pathtools==0.1.2 Using cached pathtools-0.1.2-py3-none-any.whl Collecting Pillow==9.3.0 Using cached Pillow-9.3.0-cp38-cp38-manylinux_2_28_x86_64.whl (3.3 MB) Collecting pluggy==1.0.0 Using cached pluggy-1.0.0-py2.py3-none-any.whl (13 kB) Collecting portalocker==2.6.0 Using cached portalocker-2.6.0-py2.py3-none-any.whl (15 kB) Collecting promise==2.3 Using cached promise-2.3-py3-none-any.whl Collecting protobuf==3.20.3 Using cached protobuf-3.20.3-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.whl (1.0 MB) Collecting psutil==5.9.4 Using cached psutil-5.9.4-cp36-abi3-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (280 kB) Collecting pyasn1==0.4.8 Using cached pyasn1-0.4.8-py2.py3-none-any.whl (77 kB) Collecting pyasn1-modules==0.2.8 Using cached pyasn1_modules-0.2.8-py2.py3-none-any.whl (155 kB) Collecting pybids==0.15.5 Using cached pybids-0.15.5-py3-none-any.whl (14.9 MB) Collecting pycparser==2.21 Using cached pycparser-2.21-py2.py3-none-any.whl (118 kB) Collecting Pygments==2.13.0 Using cached Pygments-2.13.0-py3-none-any.whl (1.1 MB) Collecting pyOpenSSL==22.1.0 Using cached pyOpenSSL-22.1.0-py3-none-any.whl (57 kB) Collecting pyparsing==2.4.7 Using cached pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) Collecting PyQt5==5.14.2 Using cached PyQt5-5.14.2-5.14.2-cp35.cp36.cp37.cp38-abi3-manylinux2014_x86_64.whl (63.6 MB) Collecting PyQt5-sip==12.11.0 Using cached PyQt5_sip-12.11.0-cp38-cp38-manylinux1_x86_64.whl (361 kB) Collecting pystrum==0.2 Using cached pystrum-0.2-py3-none-any.whl (19 kB) Collecting pytest==7.2.0 Using cached pytest-7.2.0-py3-none-any.whl (316 kB) Collecting pytest-console-scripts==1.3.1 Using cached pytest_console_scripts-1.3.1-py3-none-any.whl (9.0 kB) Collecting pytest-cov==4.0.0 Using cached pytest_cov-4.0.0-py3-none-any.whl (21 kB) Collecting python-dateutil==2.8.2 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) Collecting pytz==2022.6 Using cached pytz-2022.6-py2.py3-none-any.whl (498 kB) Collecting PyWavelets==1.4.1 Using cached PyWavelets-1.4.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.9 MB) Collecting PyYAML==6.0 Using cached PyYAML-6.0-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (701 kB) Collecting raven==6.10.0 Using cached raven-6.10.0-py2.py3-none-any.whl (284 kB) Collecting requests==2.28.1 Using cached requests-2.28.1-py3-none-any.whl (62 kB) Collecting requests-oauthlib==1.3.1 Using cached requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB) Collecting requirements-parser==0.5.0 Using cached requirements_parser-0.5.0-py3-none-any.whl (18 kB) Collecting rich==12.6.0 Using cached rich-12.6.0-py3-none-any.whl (237 kB) Collecting rsa==4.9 Using cached rsa-4.9-py3-none-any.whl (34 kB) Collecting scikit-image==0.19.3 Using cached scikit_image-0.19.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (14.0 MB) Collecting scikit-learn==1.1.3 Using cached scikit_learn-1.1.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (31.2 MB) Collecting scipy==1.9.3 Using cached scipy-1.9.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (33.8 MB) Collecting seaborn==0.12.1 Using cached seaborn-0.12.1-py3-none-any.whl (288 kB) Collecting sentry-sdk==1.11.1 Using cached sentry_sdk-1.11.1-py2.py3-none-any.whl (168 kB) Collecting setproctitle==1.3.2 Using cached setproctitle-1.3.2-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (31 kB) Collecting shellingham==1.5.0 Using cached shellingham-1.5.0-py2.py3-none-any.whl (9.3 kB) Collecting shortuuid==1.0.11 Using cached shortuuid-1.0.11-py3-none-any.whl (10 kB) Collecting SimpleITK==2.2.0 Using cached SimpleITK-2.2.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (52.8 MB) Collecting six==1.16.0 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting smmap==5.0.0 Using cached smmap-5.0.0-py3-none-any.whl (24 kB) Collecting SQLAlchemy==1.3.24 Using cached SQLAlchemy-1.3.24-cp38-cp38-manylinux2010_x86_64.whl (1.3 MB) Collecting sympy==1.11.1 Using cached sympy-1.11.1-py3-none-any.whl (6.5 MB) Collecting tensorboard==2.11.0 Using cached tensorboard-2.11.0-py3-none-any.whl (6.0 MB) Collecting tensorboard-data-server==0.6.1 Using cached tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl (4.9 MB) Collecting tensorboard-plugin-wit==1.8.1 Using cached tensorboard_plugin_wit-1.8.1-py3-none-any.whl (781 kB) Collecting threadpoolctl==3.1.0 Using cached threadpoolctl-3.1.0-py3-none-any.whl (14 kB) Collecting tifffile==2022.10.10 Using cached tifffile-2022.10.10-py3-none-any.whl (210 kB) Collecting tomli==2.0.1 Using cached tomli-2.0.1-py3-none-any.whl (12 kB) Collecting tqdm==4.64.1 Using cached tqdm-4.64.1-py2.py3-none-any.whl (78 kB) Collecting transforms3d==0.4.1 Using cached transforms3d-0.4.1-py3-none-any.whl Collecting typer==0.7.0 Using cached typer-0.7.0-py3-none-any.whl (38 kB) Collecting types-setuptools==65.6.0.1 Using cached types_setuptools-65.6.0.1-py3-none-any.whl (48 kB) Collecting typing_extensions==4.4.0 Using cached typing_extensions-4.4.0-py3-none-any.whl (26 kB) Collecting urllib3==1.26.13 Using cached urllib3-1.26.13-py2.py3-none-any.whl (140 kB) Collecting urllib3-secure-extra==0.1.0 Using cached urllib3_secure_extra-0.1.0-py2.py3-none-any.whl (1.4 kB) Collecting voxelmorph==0.2 Using cached voxelmorph-0.2-py3-none-any.whl (54 kB) Collecting wandb==0.13.5 Using cached wandb-0.13.5-py2.py3-none-any.whl (1.9 MB) Collecting Werkzeug==2.2.2 Using cached Werkzeug-2.2.2-py3-none-any.whl (232 kB) Collecting wquantiles==0.6 Using cached wquantiles-0.6-py3-none-any.whl (3.3 kB) Collecting wrapt==1.14.1 Using cached wrapt-1.14.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (81 kB) Collecting xlwt==1.3.0 Using cached xlwt-1.3.0-py2.py3-none-any.whl (99 kB) Collecting zipp==3.11.0 Using cached zipp-3.11.0-py3-none-any.whl (6.6 kB) Collecting torchio>=0.18.68 Using cached torchio-0.18.86-py2.py3-none-any.whl (172 kB) Collecting torchvision<=0.12.0,>=0.9.1 Using cached https://download.pytorch.org/whl/cpu/torchvision-0.12.0%2Bcpu-cp38-cp38-linux_x86_64.whl (14.7 MB) Collecting torch<=1.11.0,>=1.8.1 ./install_sct: line 648: 11390 Killed pip install -r "$REQUIREMENTS_FILE" --ignore-installed certifi Failed running pip install: 137 Installation failed! Please find the file "/home/maryam/Desktop/sct/install_sct_log.txt", then upload it as a .txt attachment in a new topic on SCT's forum: --> http://forum.spinalcordmri.org/c/sct