-- Spinal Cord Toolbox (git-master-5bc7d0763cab8456fa99b58bbaee77411e04207e) sct_check_dependencies -- SCT info: - version: git-master-5bc7d0763cab8456fa99b58bbaee77411e04207e - path: /home/joshua/repos/spinalcordtoolbox OS: linux (Linux-5.8.0-41-generic-x86_64-with-debian-bullseye-sid) CPU cores: Available: 8, Used by ITK functions: 8 RAM: Total: 15863MB, Used: 3666MB, Available: 11680MB Check Python executable.............................[OK] Using bundled python 3.6.12 |Anaconda, Inc.| (default, Sep 8 2020, 23:10:56) [GCC 7.3.0] at /home/joshua/repos/spinalcordtoolbox/python/envs/venv_sct/bin/python Check if data are installed.........................[OK] Check if colored is installed.......................[OK] (1.4.2) Check if dipy is installed..........................[OK] (1.3.0) Check if futures is installed.......................[OK] Check if h5py is installed..........................[OK] (2.10.0) Check if Keras (2.1.5) is installed.................[OK] (2.1.5) Check if ivadomed (2.6.1) is installed..............[OK] (2.6.1) Check if matplotlib is installed....................[OK] (3.3.4) Check if nibabel is installed.......................[OK] (3.2.1) Check if numpy is installed.........................[OK] (1.19.5) Check if onnxruntime (1.4.0) is installed...........[OK] (1.4.0) Check if pandas is installed........................[OK] (1.1.5) Check if psutil is installed........................[OK] (5.8.0) Check if pyqt5 (5.11.3) is installed................[OK] (5.11.3) Check if pytest is installed........................[OK] (6.2.2) Check if pytest-cov is installed....................[OK] (__version__ = '2.11.1') Check if raven is installed.........................[OK] Check if requests is installed......................[OK] (2.25.1) Check if requirements-parser is installed...........[OK] (0.2.0) Check if scipy is installed.........................[OK] (1.5.4) Check if scikit-image is installed..................[OK] (0.17.2) Check if scikit-learn is installed..................[OK] (0.24.1) Check if tensorflow (1.5.0) is installed............[OK] (1.5.0) Check if torch (1.5.0+cpu) is installed.............[OK] (1.5.0+cpu) Check if torchvision (0.6.0+cpu) is installed.......[OK] (0.6.0+cpu) Check if xlwt is installed..........................[OK] (1.3.0) Check if tqdm is installed..........................[OK] (4.56.0) Check if transforms3d is installed..................[OK] (0.3.1) Check if urllib3 is installed.......................[OK] (1.26.3) Check if pytest_console_scripts is installed........[OK] Check if pytest-xdist is installed..................[OK] (2.2.0) Check if spinalcordtoolbox is installed.............[OK] Check ANTs compatibility with OS ...................[OK] Check PropSeg compatibility with OS ................[OK] Check if DISPLAY variable is set....................[OK] Check if figure can be opened with PyQt.............[OK]