******************************* * Welcome to SCT installation * *******************************  Checking OS type and version... Darwin MacBook-Pro-26.local 24.2.0 Darwin Kernel Version 24.2.0: Fri Dec 6 19:02:12 PST 2024; root:xnu-11215.61.5~2/RELEASE_ARM64_T6031 arm64 ProductVersion: 15.2 Checking requirements... OK! Source files not present. Downloading source files (@ 6.2) to /var/folders/dt/0565rrqs32n6tt0h1mqx905r0000gn/T/tmp.SLNpHZNXcq/spinalcordtoolbox. Cloning into '/var/folders/dt/0565rrqs32n6tt0h1mqx905r0000gn/T/tmp.SLNpHZNXcq/spinalcordtoolbox'... Note: switching to '9ee15da2735ae91d7d57664e2f9cbf1232a322ae'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false SCT version ......... 6.2 Installation type ... package Operating system .... osx ( 15.2) Shell config ........ /Users/meli/.bashrc SCT will be installed here: [/Users/meli/sct_6.2]  Do you agree? [y]es/[n]o:  Copying source files from /var/folders/dt/0565rrqs32n6tt0h1mqx905r0000gn/T/tmp.SLNpHZNXcq/spinalcordtoolbox to /Users/meli/sct_6.2 ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ Do you want to add the sct_* scripts to your PATH environment? [y]es/[n]o:  Downloading Miniconda... curl -sS -o /var/folders/dt/0565rrqs32n6tt0h1mqx905r0000gn/T/tmp.SLNpHZNXcq/miniconda.sh -L https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh Installing Miniconda... bash /var/folders/dt/0565rrqs32n6tt0h1mqx905r0000gn/T/tmp.SLNpHZNXcq/miniconda.sh -p /Users/meli/sct_6.2/python -b -f PREFIX=/Users/meli/sct_6.2/python Unpacking payload ... Installing base environment... Preparing transaction: ...working... done Executing transaction: ...working... done installation finished. Creating conda environment... Channels: - defaults Platform: osx-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /Users/meli/sct_6.2/python/envs/venv_sct added / updated specs: - python=3.9 The following packages will be downloaded: package | build ---------------------------|----------------- ca-certificates-2024.12.31 | hecd8cb5_0 129 KB pip-25.0 | py39hecd8cb5_0 2.3 MB python-3.9.21 | hce00570_1 12.7 MB setuptools-75.8.0 | py39hecd8cb5_0 1.6 MB tzdata-2025a | h04d1e81_0 117 KB wheel-0.44.0 | py39hecd8cb5_0 112 KB ------------------------------------------------------------ Total: 16.8 MB The following NEW packages will be INSTALLED: ca-certificates pkgs/main/osx-64::ca-certificates-2024.12.31-hecd8cb5_0 libcxx pkgs/main/osx-64::libcxx-14.0.6-h9765a3e_0 libffi pkgs/main/osx-64::libffi-3.4.4-hecd8cb5_1 ncurses pkgs/main/osx-64::ncurses-6.4-hcec6c5f_0 openssl pkgs/main/osx-64::openssl-3.0.15-h46256e1_0 pip pkgs/main/osx-64::pip-25.0-py39hecd8cb5_0 python pkgs/main/osx-64::python-3.9.21-hce00570_1 readline pkgs/main/osx-64::readline-8.2-hca72f7f_0 setuptools pkgs/main/osx-64::setuptools-75.8.0-py39hecd8cb5_0 sqlite pkgs/main/osx-64::sqlite-3.45.3-h6c40b1e_0 tk pkgs/main/osx-64::tk-8.6.14-h4d00af3_0 tzdata pkgs/main/noarch::tzdata-2025a-h04d1e81_0 wheel pkgs/main/osx-64::wheel-0.44.0-py39hecd8cb5_0 xz pkgs/main/osx-64::xz-5.4.6-h6c40b1e_1 zlib pkgs/main/osx-64::zlib-1.2.13-h4b97444_1 Downloading and Extracting Packages: ...working... python-3.9.21 | 12.7 MB | | 0% pip-25.0 | 2.3 MB | | 0%  setuptools-75.8.0 | 1.6 MB | | 0%  ca-certificates-2024 | 129 KB | | 0%  tzdata-2025a | 117 KB | | 0%  wheel-0.44.0 | 112 KB | | 0%  tzdata-2025a | 117 KB | #3 | 14%  python-3.9.21 | 12.7 MB | | 0% tzdata-2025a | 117 KB | ########## | 100%  ca-certificates-2024 | 129 KB | #2 | 12%  setuptools-75.8.0 | 1.6 MB | 1 | 1%  pip-25.0 | 2.3 MB | | 1%  ca-certificates-2024 | 129 KB | ########## | 100%  wheel-0.44.0 | 112 KB | #4 | 14%  ca-certificates-2024 | 129 KB | ########## | 100%  wheel-0.44.0 | 112 KB | ########## | 100%  wheel-0.44.0 | 112 KB | ########## | 100%  python-3.9.21 | 12.7 MB | 3 | 4% setuptools-75.8.0 | 1.6 MB | ##7 | 27%  tzdata-2025a | 117 KB | ########## | 100%  tzdata-2025a | 117 KB | ########## | 100%  pip-25.0 | 2.3 MB | #8 | 19%  python-3.9.21 | 12.7 MB | 6 | 7% setuptools-75.8.0 | 1.6 MB | #####3 | 53%  pip-25.0 | 2.3 MB | ###9 | 39%  python-3.9.21 | 12.7 MB | #1 | 11% setuptools-75.8.0 | 1.6 MB | ########7 | 87%  pip-25.0 | 2.3 MB | #####9 | 59%  setuptools-75.8.0 | 1.6 MB | ########## | 100%  python-3.9.21 | 12.7 MB | #4 | 14% pip-25.0 | 2.3 MB | #######5 | 75%  setuptools-75.8.0 | 1.6 MB | ########## | 100%  python-3.9.21 | 12.7 MB | #8 | 18% pip-25.0 | 2.3 MB | #########5 | 96%  pip-25.0 | 2.3 MB | ########## | 100%  python-3.9.21 | 12.7 MB | ##3 | 23% pip-25.0 | 2.3 MB | ########## | 100%  python-3.9.21 | 12.7 MB | ### | 31% python-3.9.21 | 12.7 MB | ###8 | 38% python-3.9.21 | 12.7 MB | ####7 | 47% python-3.9.21 | 12.7 MB | #####7 | 58% python-3.9.21 | 12.7 MB | ######8 | 69% python-3.9.21 | 12.7 MB | #######8 | 79% python-3.9.21 | 12.7 MB | ########7 | 88% python-3.9.21 | 12.7 MB | #########7 | 97% python-3.9.21 | 12.7 MB | ########## | 100% python-3.9.21 | 12.7 MB | ########## | 100%      done Preparing transaction: - \ done Verifying transaction: / - \ | / - done Executing transaction: | / - \ | / - \ | / - \ | / - done # # To activate this environment, use # # $ conda activate /Users/meli/sct_6.2/python/envs/venv_sct # # To deactivate an active environment, use # # $ conda deactivate Requirement already satisfied: pip!=21.2.* in ./python/envs/venv_sct/lib/python3.9/site-packages (25.0) Installing Python dependencies... Using requirements-freeze.txt (release installation) Looking in indexes: https://pypi.org/simple, https://download.pytorch.org/whl/cpu Ignoring msvc-runtime: markers 'sys_platform == "win32"' don't match your environment Collecting certifi Using cached certifi-2024.12.14-py3-none-any.whl.metadata (2.3 kB) Collecting absl-py==2.1.0 (from -r requirements-freeze.txt (line 1)) Using cached absl_py-2.1.0-py3-none-any.whl.metadata (2.3 kB) Collecting acvl-utils==0.2 (from -r requirements-freeze.txt (line 2)) Using cached acvl_utils-0.2.tar.gz (18 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting appdirs==1.4.4 (from -r requirements-freeze.txt (line 3)) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Collecting astor==0.8.1 (from -r requirements-freeze.txt (line 4)) Using cached astor-0.8.1-py2.py3-none-any.whl.metadata (4.2 kB) Collecting batchgenerators==0.25 (from -r requirements-freeze.txt (line 5)) Using cached batchgenerators-0.25.tar.gz (61 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting bids-validator==1.14.0 (from -r requirements-freeze.txt (line 6)) Using cached bids_validator-1.14.0-py3-none-any.whl.metadata (38 kB) Collecting certifi Using cached certifi-2024.2.2-py3-none-any.whl.metadata (2.2 kB) Collecting charset-normalizer==3.3.2 (from -r requirements-freeze.txt (line 8)) Using cached charset_normalizer-3.3.2-cp39-cp39-macosx_10_9_x86_64.whl.metadata (33 kB) Collecting click==8.1.7 (from -r requirements-freeze.txt (line 9)) Using cached click-8.1.7-py3-none-any.whl.metadata (3.0 kB) Collecting colorama==0.4.6 (from -r requirements-freeze.txt (line 10)) Using cached https://download.pytorch.org/whl/colorama-0.4.6-py2.py3-none-any.whl (25 kB) Collecting coloredlogs==15.0.1 (from -r requirements-freeze.txt (line 11)) Using cached coloredlogs-15.0.1-py2.py3-none-any.whl.metadata (12 kB) Collecting connected-components-3d==3.12.4 (from -r requirements-freeze.txt (line 12)) Using cached connected_components_3d-3.12.4-cp39-cp39-macosx_10_9_x86_64.whl.metadata (29 kB) Collecting contourpy==1.2.0 (from -r requirements-freeze.txt (line 13)) Using cached contourpy-1.2.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (5.8 kB) Collecting coverage==7.4.1 (from -r requirements-freeze.txt (line 14)) Using cached coverage-7.4.1-cp39-cp39-macosx_10_9_x86_64.whl.metadata (8.2 kB) Collecting csv-diff==1.1 (from -r requirements-freeze.txt (line 15)) Using cached csv_diff-1.1-py3-none-any.whl.metadata (4.1 kB) Collecting cycler==0.12.1 (from -r requirements-freeze.txt (line 16)) Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting Deprecated==1.2.14 (from -r requirements-freeze.txt (line 17)) Using cached Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) Collecting dicom2nifti==2.4.10 (from -r requirements-freeze.txt (line 18)) Using cached dicom2nifti-2.4.10-py3-none-any.whl.metadata (1.3 kB) Collecting dictdiffer==0.9.0 (from -r requirements-freeze.txt (line 19)) Using cached dictdiffer-0.9.0-py2.py3-none-any.whl.metadata (4.8 kB) Collecting dipy==1.5.0 (from -r requirements-freeze.txt (line 20)) Using cached dipy-1.5.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (3.9 kB) WARNING: Ignoring version 1.5.0 of dipy since it has invalid metadata: Requested dipy==1.5.0 from https://files.pythonhosted.org/packages/82/8c/8de01c52c3ceddcdd4963b05959407e3526e9ac80da79189a2487e37ba31/dipy-1.5.0-cp39-cp39-macosx_10_9_x86_64.whl (from -r requirements-freeze.txt (line 20)) has invalid metadata: Expected matching RIGHT_PARENTHESIS for LEFT_PARENTHESIS, after version specifier fury (>=0.8.0scikit-learn) ; extra == 'all' ~~~~~~~~^ Please use pip<24.1 if you need to use this version. ERROR: Could not find a version that satisfies the requirement dipy==1.5.0 (from versions: 0.5.0, 0.6.0, 0.7.0, 0.7.1, 0.8.0, 0.9.1, 0.9.2, 0.10.1, 0.11.0, 0.12.0, 0.13.0, 0.14.0, 0.15.0, 0.16.0, 1.0.0, 1.1.0, 1.2.0, 1.3.0, 1.4.0, 1.4.1, 1.5.0, 1.6.0, 1.7.0, 1.8.0, 1.9.0, 1.10.0) ERROR: No matching distribution found for dipy==1.5.0 Failed running pip install: 1 Installation failed! Please find the file "/Users/meli/sct_6.2/install_sct_log.txt", then upload it as a .txt attachment in a new topic on SCT's forum: --> http://forum.spinalcordmri.org/c/sct