******************************* * Welcome to SCT installation * *******************************  Checking OS type and version... Darwin fauziyyas-imac.hsc.net.ou.edu 19.6.0 Darwin Kernel Version 19.6.0: Tue Jun 21 21:18:39 PDT 2022; root:xnu-6153.141.66~1/RELEASE_X86_64 x86_64 ProductVersion: 10.15.7 Checking requirements... OK! Source files not present. Downloading source files (@ 6.0) to /var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/tmp.wGhjRgHN/spinalcordtoolbox. Cloning into '/var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/tmp.wGhjRgHN/spinalcordtoolbox'... Note: switching to '99b1c0758225776278605aa2a8877e3f48714205'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false SCT version ......... 6.0 Installation type ... package Operating system .... osx (10.15.7) Shell config ........ /Users/FMUHAMMA/.bashrc SCT will be installed here: [/Users/FMUHAMMA/sct_6.0]  Do you agree? [y]es/[n]o:  Copying source files from /var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/tmp.wGhjRgHN/spinalcordtoolbox to /Users/FMUHAMMA/sct_6.0 ............................................................................................................................................................................................................................................................................................................................................................................................................................................................................... Do you want to add the sct_* scripts to your PATH environment? [y]es/[n]o:  Downloading Miniconda... curl -sS -o /var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/tmp.wGhjRgHN/miniconda.sh -L https://repo.anaconda.com/miniconda/Miniconda3-latest-MacOSX-x86_64.sh Installing Miniconda... bash /var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/tmp.wGhjRgHN/miniconda.sh -p /Users/FMUHAMMA/sct_6.0/python -b -f PREFIX=/Users/FMUHAMMA/sct_6.0/python Unpacking payload ... 0%| | 0/66 [00:00 WARNING: A newer version of conda exists. <== current version: 23.5.2 latest version: 23.7.2 Please update conda by running $ conda update -n base -c defaults conda Or to minimize the number of packages updated during conda update use conda install conda=23.7.2 ## Package Plan ## environment location: /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct added / updated specs: - python=3.9 The following packages will be downloaded: package | build ---------------------------|----------------- openssl-3.0.10 | hca72f7f_0 4.6 MB pip-23.2.1 | py39hecd8cb5_0 2.6 MB python-3.9.17 | h5ee71fb_0 12.6 MB setuptools-68.0.0 | py39hecd8cb5_0 946 KB wheel-0.38.4 | py39hecd8cb5_0 65 KB ------------------------------------------------------------ Total: 20.8 MB The following NEW packages will be INSTALLED: ca-certificates pkgs/main/osx-64::ca-certificates-2023.05.30-hecd8cb5_0 libcxx pkgs/main/osx-64::libcxx-14.0.6-h9765a3e_0 libffi pkgs/main/osx-64::libffi-3.4.4-hecd8cb5_0 ncurses pkgs/main/osx-64::ncurses-6.4-hcec6c5f_0 openssl pkgs/main/osx-64::openssl-3.0.10-hca72f7f_0 pip pkgs/main/osx-64::pip-23.2.1-py39hecd8cb5_0 python pkgs/main/osx-64::python-3.9.17-h5ee71fb_0 readline pkgs/main/osx-64::readline-8.2-hca72f7f_0 setuptools pkgs/main/osx-64::setuptools-68.0.0-py39hecd8cb5_0 sqlite pkgs/main/osx-64::sqlite-3.41.2-h6c40b1e_0 tk pkgs/main/osx-64::tk-8.6.12-h5d9f67b_0 tzdata pkgs/main/noarch::tzdata-2023c-h04d1e81_0 wheel pkgs/main/osx-64::wheel-0.38.4-py39hecd8cb5_0 xz pkgs/main/osx-64::xz-5.4.2-h6c40b1e_0 zlib pkgs/main/osx-64::zlib-1.2.13-h4dc903c_0 Downloading and Extracting Packages pip-23.2.1 | 2.6 MB | | 0% setuptools-68.0.0 | 946 KB | | 0%  python-3.9.17 | 12.6 MB | | 0%  openssl-3.0.10 | 4.6 MB | | 0%  wheel-0.38.4 | 65 KB | | 0%  wheel-0.38.4 | 65 KB | ##4 | 25%  pip-23.2.1 | 2.6 MB | | 1% openssl-3.0.10 | 4.6 MB | | 0%  setuptools-68.0.0 | 946 KB | 1 | 2%  python-3.9.17 | 12.6 MB | | 0%  wheel-0.38.4 | 65 KB | ########## | 100%  python-3.9.17 | 12.6 MB | #7 | 18%  python-3.9.17 | 12.6 MB | ######## | 81%  openssl-3.0.10 | 4.6 MB | ########## | 100%  openssl-3.0.10 | 4.6 MB | ########## | 100%  setuptools-68.0.0 | 946 KB | ########## | 100%  setuptools-68.0.0 | 946 KB | ########## | 100%  pip-23.2.1 | 2.6 MB | ########## | 100% pip-23.2.1 | 2.6 MB | ########## | 100% python-3.9.17 | 12.6 MB | ########## | 100%      Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done # # To activate this environment, use # # $ conda activate /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct # # To deactivate an active environment, use # # $ conda deactivate Requirement already satisfied: pip!=21.2.* in ./python/envs/venv_sct/lib/python3.9/site-packages (23.2.1) Installing Python dependencies... Using requirements-freeze.txt (release installation) Looking in indexes: https://pypi.org/simple, https://download.pytorch.org/whl/cpu Ignoring msvc-runtime: markers 'sys_platform == "win32"' don't match your environment Collecting certifi Obtaining dependency information for certifi from https://files.pythonhosted.org/packages/4c/dd/2234eab22353ffc7d94e8d13177aaa050113286e93e7b40eae01fbf7c3d9/certifi-2023.7.22-py3-none-any.whl.metadata Downloading certifi-2023.7.22-py3-none-any.whl.metadata (2.2 kB) Collecting absl-py==1.4.0 (from -r requirements-freeze.txt (line 1)) Downloading absl_py-1.4.0-py3-none-any.whl (126 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 126.5/126.5 kB 2.6 MB/s eta 0:00:00 Collecting appdirs==1.4.4 (from -r requirements-freeze.txt (line 2)) Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Collecting astor==0.8.1 (from -r requirements-freeze.txt (line 3)) Downloading astor-0.8.1-py2.py3-none-any.whl (27 kB) Collecting bids-validator==1.12.0 (from -r requirements-freeze.txt (line 4)) Obtaining dependency information for bids-validator==1.12.0 from https://files.pythonhosted.org/packages/4f/6b/7c22873d76d4dbe4b70f42541d3262e93593bd4e508af308662ea5e5f5bc/bids_validator-1.12.0-py2.py3-none-any.whl.metadata Downloading bids_validator-1.12.0-py2.py3-none-any.whl.metadata (38 kB) Collecting cachetools==5.3.1 (from -r requirements-freeze.txt (line 5)) Obtaining dependency information for cachetools==5.3.1 from https://files.pythonhosted.org/packages/a9/c9/c8a7710f2cedcb1db9224fdd4d8307c9e48cbddc46c18b515fefc0f1abbe/cachetools-5.3.1-py3-none-any.whl.metadata Downloading cachetools-5.3.1-py3-none-any.whl.metadata (5.2 kB) Collecting certifi Downloading certifi-2023.5.7-py3-none-any.whl (156 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 157.0/157.0 kB 3.8 MB/s eta 0:00:00 Collecting charset-normalizer==3.2.0 (from -r requirements-freeze.txt (line 7)) Obtaining dependency information for charset-normalizer==3.2.0 from https://files.pythonhosted.org/packages/7b/c6/7f75892d87d7afcf8ed909f3e74de1bc61abd9d77cd9aab1f449430856c5/charset_normalizer-3.2.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading charset_normalizer-3.2.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (31 kB) Collecting click==8.1.5 (from -r requirements-freeze.txt (line 8)) Obtaining dependency information for click==8.1.5 from https://files.pythonhosted.org/packages/22/b3/1da4ea0efa2e5ae410a347be614162ca08bd24a84059938aa5122d1e751b/click-8.1.5-py3-none-any.whl.metadata Downloading click-8.1.5-py3-none-any.whl.metadata (3.0 kB) Collecting colorama==0.4.6 (from -r requirements-freeze.txt (line 9)) Downloading https://download.pytorch.org/whl/colorama-0.4.6-py2.py3-none-any.whl (25 kB) Collecting coloredlogs==15.0.1 (from -r requirements-freeze.txt (line 10)) Downloading coloredlogs-15.0.1-py2.py3-none-any.whl (46 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.0/46.0 kB 1.4 MB/s eta 0:00:00 Collecting contourpy==1.1.0 (from -r requirements-freeze.txt (line 11)) Obtaining dependency information for contourpy==1.1.0 from https://files.pythonhosted.org/packages/44/b4/2bcb2f8afcb7a4652af0fbfa47d5f01ae599c4b35af6f89c1f33c9c56fa3/contourpy-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading contourpy-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (5.7 kB) Collecting coverage==7.2.7 (from -r requirements-freeze.txt (line 12)) Obtaining dependency information for coverage==7.2.7 from https://files.pythonhosted.org/packages/88/da/495944ebf0ad246235a6bd523810d9f81981f9b81c6059ba1f56e943abe0/coverage-7.2.7-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading coverage-7.2.7-cp39-cp39-macosx_10_9_x86_64.whl.metadata (9.7 kB) Collecting csv-diff==1.1 (from -r requirements-freeze.txt (line 13)) Downloading csv_diff-1.1-py3-none-any.whl (12 kB) Collecting cycler==0.11.0 (from -r requirements-freeze.txt (line 14)) Downloading cycler-0.11.0-py3-none-any.whl (6.4 kB) Collecting Deprecated==1.2.14 (from -r requirements-freeze.txt (line 15)) Obtaining dependency information for Deprecated==1.2.14 from https://files.pythonhosted.org/packages/20/8d/778b7d51b981a96554f29136cd59ca7880bf58094338085bcf2a979a0e6a/Deprecated-1.2.14-py2.py3-none-any.whl.metadata Downloading Deprecated-1.2.14-py2.py3-none-any.whl.metadata (5.4 kB) Collecting dictdiffer==0.9.0 (from -r requirements-freeze.txt (line 16)) Downloading dictdiffer-0.9.0-py2.py3-none-any.whl (16 kB) Collecting dipy==1.7.0 (from -r requirements-freeze.txt (line 17)) Downloading dipy-1.7.0-cp39-cp39-macosx_10_9_x86_64.whl (8.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.4/8.4 MB 16.4 MB/s eta 0:00:00 Collecting docker-pycreds==0.4.0 (from -r requirements-freeze.txt (line 18)) Downloading docker_pycreds-0.4.0-py2.py3-none-any.whl (9.0 kB) Collecting docopt==0.6.2 (from -r requirements-freeze.txt (line 19)) Downloading docopt-0.6.2.tar.gz (25 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting exceptiongroup==1.1.2 (from -r requirements-freeze.txt (line 20)) Obtaining dependency information for exceptiongroup==1.1.2 from https://files.pythonhosted.org/packages/fe/17/f43b7c9ccf399d72038042ee72785c305f6c6fdc6231942f8ab99d995742/exceptiongroup-1.1.2-py3-none-any.whl.metadata Downloading exceptiongroup-1.1.2-py3-none-any.whl.metadata (6.1 kB) Collecting flatbuffers==23.5.26 (from -r requirements-freeze.txt (line 21)) Obtaining dependency information for flatbuffers==23.5.26 from https://files.pythonhosted.org/packages/6f/12/d5c79ee252793ffe845d58a913197bfa02ae9a0b5c9bc3dc4b58d477b9e7/flatbuffers-23.5.26-py2.py3-none-any.whl.metadata Downloading flatbuffers-23.5.26-py2.py3-none-any.whl.metadata (850 bytes) Collecting fonttools==4.41.0 (from -r requirements-freeze.txt (line 22)) Obtaining dependency information for fonttools==4.41.0 from https://files.pythonhosted.org/packages/ee/55/4312074b87b3cc25e9892e2cde402d784811f89c3dbe5a3cea9dccae16c1/fonttools-4.41.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading fonttools-4.41.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (149 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 149.4/149.4 kB 5.3 MB/s eta 0:00:00 Collecting formulaic==0.5.2 (from -r requirements-freeze.txt (line 23)) Downloading formulaic-0.5.2-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.1/77.1 kB 2.7 MB/s eta 0:00:00 Collecting gitdb==4.0.10 (from -r requirements-freeze.txt (line 24)) Downloading gitdb-4.0.10-py3-none-any.whl (62 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 62.7/62.7 kB 2.1 MB/s eta 0:00:00 Collecting GitPython==3.1.32 (from -r requirements-freeze.txt (line 25)) Obtaining dependency information for GitPython==3.1.32 from https://files.pythonhosted.org/packages/67/50/742c2fb60989b76ccf7302c7b1d9e26505d7054c24f08cc7ec187faaaea7/GitPython-3.1.32-py3-none-any.whl.metadata Downloading GitPython-3.1.32-py3-none-any.whl.metadata (10.0 kB) Collecting google-auth==2.22.0 (from -r requirements-freeze.txt (line 26)) Obtaining dependency information for google-auth==2.22.0 from https://files.pythonhosted.org/packages/9c/8d/bff87fc722553a5691d8514da5523c23547f3894189ba03b57592e37bdc2/google_auth-2.22.0-py2.py3-none-any.whl.metadata Downloading google_auth-2.22.0-py2.py3-none-any.whl.metadata (4.2 kB) Collecting google-auth-oauthlib==1.0.0 (from -r requirements-freeze.txt (line 27)) Downloading google_auth_oauthlib-1.0.0-py2.py3-none-any.whl (18 kB) Collecting greenlet==2.0.2 (from -r requirements-freeze.txt (line 28)) Downloading greenlet-2.0.2.tar.gz (164 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 165.0/165.0 kB 6.1 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting grpcio==1.56.0 (from -r requirements-freeze.txt (line 29)) Obtaining dependency information for grpcio==1.56.0 from https://files.pythonhosted.org/packages/97/b3/fb1dcedf39be0854403a28935f2c1e7e4025b3579801c7e91a1cac5b665c/grpcio-1.56.0-cp39-cp39-macosx_10_10_universal2.whl.metadata Downloading grpcio-1.56.0-cp39-cp39-macosx_10_10_universal2.whl.metadata (4.0 kB) Collecting h5py==3.9.0 (from -r requirements-freeze.txt (line 30)) Obtaining dependency information for h5py==3.9.0 from https://files.pythonhosted.org/packages/4a/06/14ec12a6ffbee069198dca25792a997865ee1c727a5c4aa82472d3223f74/h5py-3.9.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading h5py-3.9.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (2.5 kB) Collecting humanfriendly==10.0 (from -r requirements-freeze.txt (line 31)) Downloading humanfriendly-10.0-py2.py3-none-any.whl (86 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 86.8/86.8 kB 2.9 MB/s eta 0:00:00 Collecting humanize==4.7.0 (from -r requirements-freeze.txt (line 32)) Obtaining dependency information for humanize==4.7.0 from https://files.pythonhosted.org/packages/5e/81/60bbbb745b397fa56b82ec71ecbada00f574319b8f36c5f53c6c0c0c0601/humanize-4.7.0-py3-none-any.whl.metadata Downloading humanize-4.7.0-py3-none-any.whl.metadata (7.9 kB) Collecting idna==3.4 (from -r requirements-freeze.txt (line 33)) Downloading https://download.pytorch.org/whl/idna-3.4-py3-none-any.whl (61 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 61.5/61.5 kB 2.0 MB/s eta 0:00:00 Collecting imageio==2.31.1 (from -r requirements-freeze.txt (line 34)) Obtaining dependency information for imageio==2.31.1 from https://files.pythonhosted.org/packages/c7/b0/7b6c35b8636ed773325cdb6f5ac3cd36afba63d99e20ed59c521cf5018b4/imageio-2.31.1-py3-none-any.whl.metadata Downloading imageio-2.31.1-py3-none-any.whl.metadata (4.7 kB) Collecting importlib-metadata==6.8.0 (from -r requirements-freeze.txt (line 35)) Obtaining dependency information for importlib-metadata==6.8.0 from https://files.pythonhosted.org/packages/cc/37/db7ba97e676af155f5fcb1a35466f446eadc9104e25b83366e8088c9c926/importlib_metadata-6.8.0-py3-none-any.whl.metadata Downloading importlib_metadata-6.8.0-py3-none-any.whl.metadata (5.1 kB) Collecting importlib-resources==6.0.0 (from -r requirements-freeze.txt (line 36)) Obtaining dependency information for importlib-resources==6.0.0 from https://files.pythonhosted.org/packages/29/d1/bed03eca30aa05aaf6e0873de091f9385c48705c4a607c2dfe3edbe543e8/importlib_resources-6.0.0-py3-none-any.whl.metadata Downloading importlib_resources-6.0.0-py3-none-any.whl.metadata (4.2 kB) Collecting iniconfig==2.0.0 (from -r requirements-freeze.txt (line 37)) Downloading iniconfig-2.0.0-py3-none-any.whl (5.9 kB) Collecting interface-meta==1.3.0 (from -r requirements-freeze.txt (line 38)) Downloading interface_meta-1.3.0-py3-none-any.whl (14 kB) Collecting ivadomed==2.9.8 (from -r requirements-freeze.txt (line 39)) Downloading ivadomed-2.9.8-py3-none-any.whl (236 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 236.5/236.5 kB 8.5 MB/s eta 0:00:00 Collecting joblib==1.3.1 (from -r requirements-freeze.txt (line 40)) Obtaining dependency information for joblib==1.3.1 from https://files.pythonhosted.org/packages/28/08/9dcdaa5aac4634e4c23af26d92121f7ce445c630efa0d3037881ae2407fb/joblib-1.3.1-py3-none-any.whl.metadata Downloading joblib-1.3.1-py3-none-any.whl.metadata (5.4 kB) Collecting kiwisolver==1.4.4 (from -r requirements-freeze.txt (line 41)) Downloading kiwisolver-1.4.4-cp39-cp39-macosx_10_9_x86_64.whl (65 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 65.5/65.5 kB 2.2 MB/s eta 0:00:00 Collecting lazy_loader==0.3 (from -r requirements-freeze.txt (line 42)) Obtaining dependency information for lazy_loader==0.3 from https://files.pythonhosted.org/packages/a1/c3/65b3814e155836acacf720e5be3b5757130346670ac454fee29d3eda1381/lazy_loader-0.3-py3-none-any.whl.metadata Downloading lazy_loader-0.3-py3-none-any.whl.metadata (4.3 kB) Collecting loguru==0.7.0 (from -r requirements-freeze.txt (line 43)) Downloading loguru-0.7.0-py3-none-any.whl (59 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 60.0/60.0 kB 2.0 MB/s eta 0:00:00 Collecting lxml==4.9.3 (from -r requirements-freeze.txt (line 44)) Downloading lxml-4.9.3.tar.gz (3.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.6/3.6 MB 38.7 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting Markdown==3.4.3 (from -r requirements-freeze.txt (line 45)) Downloading Markdown-3.4.3-py3-none-any.whl (93 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.9/93.9 kB 2.9 MB/s eta 0:00:00 Collecting markdown-it-py==3.0.0 (from -r requirements-freeze.txt (line 46)) Obtaining dependency information for markdown-it-py==3.0.0 from https://files.pythonhosted.org/packages/42/d7/1ec15b46af6af88f19b8e5ffea08fa375d433c998b8a7639e76935c14f1f/markdown_it_py-3.0.0-py3-none-any.whl.metadata Downloading markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB) Collecting MarkupSafe==2.1.3 (from -r requirements-freeze.txt (line 47)) Obtaining dependency information for MarkupSafe==2.1.3 from https://files.pythonhosted.org/packages/62/9b/4908a57acf39d8811836bc6776b309c2e07d63791485589acf0b6d7bc0c6/MarkupSafe-2.1.3-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading MarkupSafe-2.1.3-cp39-cp39-macosx_10_9_x86_64.whl.metadata (3.0 kB) Collecting matplotlib==3.7.2 (from -r requirements-freeze.txt (line 48)) Obtaining dependency information for matplotlib==3.7.2 from https://files.pythonhosted.org/packages/1d/57/888776de79e1c2e787368ecbe63e3e57dbec984a5c83220e44c15fefe226/matplotlib-3.7.2-cp39-cp39-macosx_10_12_x86_64.whl.metadata Downloading matplotlib-3.7.2-cp39-cp39-macosx_10_12_x86_64.whl.metadata (5.6 kB) Collecting mdurl==0.1.2 (from -r requirements-freeze.txt (line 49)) Downloading mdurl-0.1.2-py3-none-any.whl (10.0 kB) Collecting mpmath==1.3.0 (from -r requirements-freeze.txt (line 50)) Downloading mpmath-1.3.0-py3-none-any.whl (536 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 536.2/536.2 kB 16.2 MB/s eta 0:00:00 Collecting networkx==3.1 (from -r requirements-freeze.txt (line 51)) Downloading networkx-3.1-py3-none-any.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 37.9 MB/s eta 0:00:00 Collecting neurite==0.2 (from -r requirements-freeze.txt (line 52)) Downloading neurite-0.2-py3-none-any.whl (108 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 108.9/108.9 kB 3.5 MB/s eta 0:00:00 Collecting nibabel==3.2.2 (from -r requirements-freeze.txt (line 53)) Downloading nibabel-3.2.2-py3-none-any.whl (3.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.3/3.3 MB 9.7 MB/s eta 0:00:00 Collecting nilearn==0.10.1 (from -r requirements-freeze.txt (line 54)) Downloading nilearn-0.10.1-py3-none-any.whl (10.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 10.3/10.3 MB 24.0 MB/s eta 0:00:00 Collecting num2words==0.5.12 (from -r requirements-freeze.txt (line 55)) Downloading num2words-0.5.12-py3-none-any.whl (125 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 125.2/125.2 kB 4.6 MB/s eta 0:00:00 Collecting numpy==1.23.5 (from -r requirements-freeze.txt (line 56)) Downloading numpy-1.23.5-cp39-cp39-macosx_10_9_x86_64.whl (18.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.1/18.1 MB 19.3 MB/s eta 0:00:00 Collecting oauthlib==3.2.2 (from -r requirements-freeze.txt (line 57)) Downloading oauthlib-3.2.2-py3-none-any.whl (151 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 151.7/151.7 kB 5.5 MB/s eta 0:00:00 Collecting onnxruntime==1.15.1 (from -r requirements-freeze.txt (line 58)) Obtaining dependency information for onnxruntime==1.15.1 from https://files.pythonhosted.org/packages/a5/95/cccadd11fb503f51743dc12705ff38a1a2990600c0bdcf2758011800e081/onnxruntime-1.15.1-cp39-cp39-macosx_10_15_x86_64.whl.metadata Downloading onnxruntime-1.15.1-cp39-cp39-macosx_10_15_x86_64.whl.metadata (4.0 kB) Collecting packaging==23.1 (from -r requirements-freeze.txt (line 59)) Downloading packaging-23.1-py3-none-any.whl (48 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.9/48.9 kB 1.6 MB/s eta 0:00:00 Collecting pandas==1.4.4 (from -r requirements-freeze.txt (line 60)) Downloading pandas-1.4.4-cp39-cp39-macosx_10_9_x86_64.whl (11.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.5/11.5 MB 25.8 MB/s eta 0:00:00 Collecting pathtools==0.1.2 (from -r requirements-freeze.txt (line 61)) Downloading pathtools-0.1.2.tar.gz (11 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting Pillow==10.0.0 (from -r requirements-freeze.txt (line 62)) Obtaining dependency information for Pillow==10.0.0 from https://files.pythonhosted.org/packages/ce/e1/861a5508b9fd82b39c05e4d49c0979a9c8ccab07dae39d0ce72bd5f2299d/Pillow-10.0.0-cp39-cp39-macosx_10_10_x86_64.whl.metadata Downloading Pillow-10.0.0-cp39-cp39-macosx_10_10_x86_64.whl.metadata (9.5 kB) Collecting pluggy==1.2.0 (from -r requirements-freeze.txt (line 63)) Obtaining dependency information for pluggy==1.2.0 from https://files.pythonhosted.org/packages/51/32/4a79112b8b87b21450b066e102d6608907f4c885ed7b04c3fdb085d4d6ae/pluggy-1.2.0-py3-none-any.whl.metadata Downloading pluggy-1.2.0-py3-none-any.whl.metadata (4.4 kB) Collecting portalocker==2.7.0 (from -r requirements-freeze.txt (line 64)) Downloading portalocker-2.7.0-py2.py3-none-any.whl (15 kB) Collecting protobuf==4.23.4 (from -r requirements-freeze.txt (line 65)) Obtaining dependency information for protobuf==4.23.4 from https://files.pythonhosted.org/packages/cb/d3/a164038605494d49acc4f9cda1c0bc200b96382c53edd561387263bb181d/protobuf-4.23.4-cp37-abi3-macosx_10_9_universal2.whl.metadata Downloading protobuf-4.23.4-cp37-abi3-macosx_10_9_universal2.whl.metadata (540 bytes) Collecting psutil==5.9.5 (from -r requirements-freeze.txt (line 66)) Downloading psutil-5.9.5-cp36-abi3-macosx_10_9_x86_64.whl (245 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 245.3/245.3 kB 9.0 MB/s eta 0:00:00 Collecting pyasn1==0.5.0 (from -r requirements-freeze.txt (line 67)) Downloading pyasn1-0.5.0-py2.py3-none-any.whl (83 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 83.9/83.9 kB 3.0 MB/s eta 0:00:00 Collecting pyasn1-modules==0.3.0 (from -r requirements-freeze.txt (line 68)) Downloading pyasn1_modules-0.3.0-py2.py3-none-any.whl (181 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 181.3/181.3 kB 6.6 MB/s eta 0:00:00 Collecting pybids==0.16.1 (from -r requirements-freeze.txt (line 69)) Downloading pybids-0.16.1-py3-none-any.whl (14.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 14.9/14.9 MB 18.3 MB/s eta 0:00:00 Collecting Pygments==2.15.1 (from -r requirements-freeze.txt (line 70)) Downloading Pygments-2.15.1-py3-none-any.whl (1.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.1/1.1 MB 32.4 MB/s eta 0:00:00 Collecting pyparsing==2.4.7 (from -r requirements-freeze.txt (line 71)) Downloading pyparsing-2.4.7-py2.py3-none-any.whl (67 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 67.8/67.8 kB 2.3 MB/s eta 0:00:00 Collecting PyQt5==5.12.3 (from -r requirements-freeze.txt (line 72)) Downloading PyQt5-5.12.3-5.12.10-cp35.cp36.cp37.cp38.cp39-abi3-macosx_10_6_intel.whl (39.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 39.8/39.8 MB 8.6 MB/s eta 0:00:00 Collecting PyQt5-sip==12.12.1 (from -r requirements-freeze.txt (line 73)) Downloading PyQt5_sip-12.12.1-cp39-cp39-macosx_10_9_universal2.whl (142 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 142.7/142.7 kB 5.4 MB/s eta 0:00:00 Collecting pystrum==0.3 (from -r requirements-freeze.txt (line 74)) Downloading pystrum-0.3.tar.gz (17 kB) Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting pytest==7.4.0 (from -r requirements-freeze.txt (line 75)) Obtaining dependency information for pytest==7.4.0 from https://files.pythonhosted.org/packages/33/b2/741130cbcf2bbfa852ed95a60dc311c9e232c7ed25bac3d9b8880a8df4ae/pytest-7.4.0-py3-none-any.whl.metadata Downloading pytest-7.4.0-py3-none-any.whl.metadata (8.0 kB) Collecting pytest-console-scripts==1.4.1 (from -r requirements-freeze.txt (line 76)) Obtaining dependency information for pytest-console-scripts==1.4.1 from https://files.pythonhosted.org/packages/32/12/149a568c244b58912350c7fd3b997ed6b57889a22098564cc43c3e511b76/pytest_console_scripts-1.4.1-py3-none-any.whl.metadata Downloading pytest_console_scripts-1.4.1-py3-none-any.whl.metadata (11 kB) Collecting pytest-cov==4.1.0 (from -r requirements-freeze.txt (line 77)) Obtaining dependency information for pytest-cov==4.1.0 from https://files.pythonhosted.org/packages/a7/4b/8b78d126e275efa2379b1c2e09dc52cf70df16fc3b90613ef82531499d73/pytest_cov-4.1.0-py3-none-any.whl.metadata Downloading pytest_cov-4.1.0-py3-none-any.whl.metadata (26 kB) Collecting python-dateutil==2.8.2 (from -r requirements-freeze.txt (line 78)) Downloading python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 247.7/247.7 kB 8.8 MB/s eta 0:00:00 Collecting pytz==2023.3 (from -r requirements-freeze.txt (line 79)) Downloading pytz-2023.3-py2.py3-none-any.whl (502 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 502.3/502.3 kB 11.2 MB/s eta 0:00:00 Collecting PyWavelets==1.4.1 (from -r requirements-freeze.txt (line 80)) Downloading PyWavelets-1.4.1-cp39-cp39-macosx_10_13_x86_64.whl (4.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.4/4.4 MB 24.0 MB/s eta 0:00:00 Collecting PyYAML==6.0 (from -r requirements-freeze.txt (line 81)) Downloading PyYAML-6.0-cp39-cp39-macosx_10_9_x86_64.whl (197 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 197.6/197.6 kB 7.4 MB/s eta 0:00:00 Collecting requests==2.31.0 (from -r requirements-freeze.txt (line 82)) Obtaining dependency information for requests==2.31.0 from https://files.pythonhosted.org/packages/70/8e/0e2d847013cb52cd35b38c009bb167a1a26b2ce6cd6965bf26b47bc0bf44/requests-2.31.0-py3-none-any.whl.metadata Downloading requests-2.31.0-py3-none-any.whl.metadata (4.6 kB) Collecting requests-oauthlib==1.3.1 (from -r requirements-freeze.txt (line 83)) Downloading requests_oauthlib-1.3.1-py2.py3-none-any.whl (23 kB) Collecting requirements-parser==0.5.0 (from -r requirements-freeze.txt (line 84)) Downloading requirements_parser-0.5.0-py3-none-any.whl (18 kB) Collecting rich==13.4.2 (from -r requirements-freeze.txt (line 85)) Obtaining dependency information for rich==13.4.2 from https://files.pythonhosted.org/packages/fc/1e/482e5eec0b89b593e81d78f819a9412849814e22225842b598908e7ac560/rich-13.4.2-py3-none-any.whl.metadata Downloading rich-13.4.2-py3-none-any.whl.metadata (18 kB) Collecting rsa==4.9 (from -r requirements-freeze.txt (line 86)) Downloading rsa-4.9-py3-none-any.whl (34 kB) Collecting scikit-image==0.21.0 (from -r requirements-freeze.txt (line 87)) Obtaining dependency information for scikit-image==0.21.0 from https://files.pythonhosted.org/packages/ac/96/6a64d241498380dc5f0dca8e48981cd610d31d661a59f90d5ac242546906/scikit_image-0.21.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading scikit_image-0.21.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (14 kB) Collecting scikit-learn==1.3.0 (from -r requirements-freeze.txt (line 88)) Obtaining dependency information for scikit-learn==1.3.0 from https://files.pythonhosted.org/packages/96/44/330d6b84580fe5fd64220c96eba31c0c3e19677c388667eaf37545b0218b/scikit_learn-1.3.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading scikit_learn-1.3.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (11 kB) Collecting scipy==1.11.1 (from -r requirements-freeze.txt (line 89)) Obtaining dependency information for scipy==1.11.1 from https://files.pythonhosted.org/packages/7f/0e/a3670cee9cfdb3433f89c75c8b368bea621aa8f60a3a1eb7a9d5ff72ada2/scipy-1.11.1-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading scipy-1.11.1-cp39-cp39-macosx_10_9_x86_64.whl.metadata (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.1/54.1 kB 1.9 MB/s eta 0:00:00 Collecting seaborn==0.12.2 (from -r requirements-freeze.txt (line 90)) Downloading seaborn-0.12.2-py3-none-any.whl (293 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 293.3/293.3 kB 10.6 MB/s eta 0:00:00 Collecting sentry-sdk==1.28.1 (from -r requirements-freeze.txt (line 91)) Obtaining dependency information for sentry-sdk==1.28.1 from https://files.pythonhosted.org/packages/8b/ef/cee575cda78f419a76ac9be4830f136c16bc2d90f00720f03b70bf7d8a6d/sentry_sdk-1.28.1-py2.py3-none-any.whl.metadata Downloading sentry_sdk-1.28.1-py2.py3-none-any.whl.metadata (8.8 kB) Collecting setproctitle==1.3.2 (from -r requirements-freeze.txt (line 92)) Downloading setproctitle-1.3.2-cp39-cp39-macosx_10_9_x86_64.whl (11 kB) Collecting shellingham==1.5.0.post1 (from -r requirements-freeze.txt (line 93)) Downloading shellingham-1.5.0.post1-py2.py3-none-any.whl (9.4 kB) Collecting SimpleITK==2.2.1 (from -r requirements-freeze.txt (line 94)) Downloading SimpleITK-2.2.1-cp39-cp39-macosx_10_9_x86_64.whl (45.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.5/45.5 MB 18.0 MB/s eta 0:00:00 Collecting six==1.16.0 (from -r requirements-freeze.txt (line 95)) Downloading six-1.16.0-py2.py3-none-any.whl (11 kB) Collecting smmap==5.0.0 (from -r requirements-freeze.txt (line 96)) Downloading smmap-5.0.0-py3-none-any.whl (24 kB) Collecting SQLAlchemy==2.0.18 (from -r requirements-freeze.txt (line 97)) Obtaining dependency information for SQLAlchemy==2.0.18 from https://files.pythonhosted.org/packages/45/5f/ab71605ec28b785358f65eb6c9e8e3268728070200217a97bad0bf1d7246/SQLAlchemy-2.0.18-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading SQLAlchemy-2.0.18-cp39-cp39-macosx_10_9_x86_64.whl.metadata (9.4 kB) Collecting sympy==1.12 (from -r requirements-freeze.txt (line 98)) Downloading sympy-1.12-py3-none-any.whl (5.7 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.7/5.7 MB 65.8 MB/s eta 0:00:00 Collecting tensorboard==2.13.0 (from -r requirements-freeze.txt (line 99)) Downloading tensorboard-2.13.0-py3-none-any.whl (5.6 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.6/5.6 MB 63.8 MB/s eta 0:00:00 Collecting tensorboard-data-server==0.7.1 (from -r requirements-freeze.txt (line 100)) Obtaining dependency information for tensorboard-data-server==0.7.1 from https://files.pythonhosted.org/packages/37/52/da3f777c56fdcf3a484493ce58403c1af709709cd05dab9894980fc8d962/tensorboard_data_server-0.7.1-py3-none-macosx_10_9_x86_64.whl.metadata Downloading tensorboard_data_server-0.7.1-py3-none-macosx_10_9_x86_64.whl.metadata (1.1 kB) Collecting threadpoolctl==3.2.0 (from -r requirements-freeze.txt (line 101)) Obtaining dependency information for threadpoolctl==3.2.0 from https://files.pythonhosted.org/packages/81/12/fd4dea011af9d69e1cad05c75f3f7202cdcbeac9b712eea58ca779a72865/threadpoolctl-3.2.0-py3-none-any.whl.metadata Downloading threadpoolctl-3.2.0-py3-none-any.whl.metadata (10.0 kB) Collecting tifffile==2023.7.10 (from -r requirements-freeze.txt (line 102)) Obtaining dependency information for tifffile==2023.7.10 from https://files.pythonhosted.org/packages/06/a3/68d17088a4f09565bc7341fd20490da8191ec4cddde479daaabbe07bb603/tifffile-2023.7.10-py3-none-any.whl.metadata Downloading tifffile-2023.7.10-py3-none-any.whl.metadata (31 kB) Collecting tomli==2.0.1 (from -r requirements-freeze.txt (line 103)) Downloading tomli-2.0.1-py3-none-any.whl (12 kB) Collecting tqdm==4.65.0 (from -r requirements-freeze.txt (line 104)) Downloading tqdm-4.65.0-py3-none-any.whl (77 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 77.1/77.1 kB 2.6 MB/s eta 0:00:00 Collecting transforms3d==0.4.1 (from -r requirements-freeze.txt (line 105)) Downloading transforms3d-0.4.1.tar.gz (1.4 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 34.0 MB/s eta 0:00:00 Preparing metadata (setup.py): started Preparing metadata (setup.py): finished with status 'done' Collecting typer==0.9.0 (from -r requirements-freeze.txt (line 106)) Downloading typer-0.9.0-py3-none-any.whl (45 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 45.9/45.9 kB 1.4 MB/s eta 0:00:00 Collecting types-setuptools==68.0.0.1 (from -r requirements-freeze.txt (line 107)) Obtaining dependency information for types-setuptools==68.0.0.1 from https://files.pythonhosted.org/packages/c5/75/b93ec80fa3267a5b1cfa9ecec3cdb46a12a078288545e3240b4e6eec4b84/types_setuptools-68.0.0.1-py3-none-any.whl.metadata Downloading types_setuptools-68.0.0.1-py3-none-any.whl.metadata (1.6 kB) Collecting typing_extensions==4.7.1 (from -r requirements-freeze.txt (line 108)) Obtaining dependency information for typing_extensions==4.7.1 from https://files.pythonhosted.org/packages/ec/6b/63cc3df74987c36fe26157ee12e09e8f9db4de771e0f3404263117e75b95/typing_extensions-4.7.1-py3-none-any.whl.metadata Downloading typing_extensions-4.7.1-py3-none-any.whl.metadata (3.1 kB) Collecting urllib3==1.26.16 (from -r requirements-freeze.txt (line 109)) Obtaining dependency information for urllib3==1.26.16 from https://files.pythonhosted.org/packages/c5/05/c214b32d21c0b465506f95c4f28ccbcba15022e000b043b72b3df7728471/urllib3-1.26.16-py2.py3-none-any.whl.metadata Downloading urllib3-1.26.16-py2.py3-none-any.whl.metadata (48 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 48.4/48.4 kB 1.5 MB/s eta 0:00:00 Collecting voxelmorph==0.2 (from -r requirements-freeze.txt (line 110)) Downloading voxelmorph-0.2-py3-none-any.whl (54 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.2/54.2 kB 1.7 MB/s eta 0:00:00 Collecting wandb==0.15.5 (from -r requirements-freeze.txt (line 111)) Obtaining dependency information for wandb==0.15.5 from https://files.pythonhosted.org/packages/87/26/66e944b17aa06a4c9df9850a6a5c56378cb4f9b3acf3452ace7dfd895c13/wandb-0.15.5-py3-none-any.whl.metadata Downloading wandb-0.15.5-py3-none-any.whl.metadata (8.2 kB) Collecting Werkzeug==2.3.6 (from -r requirements-freeze.txt (line 112)) Obtaining dependency information for Werkzeug==2.3.6 from https://files.pythonhosted.org/packages/ba/d6/8040faecaba2feb84e1647af174b3243c9b90c163c7ea407820839931efe/Werkzeug-2.3.6-py3-none-any.whl.metadata Downloading Werkzeug-2.3.6-py3-none-any.whl.metadata (4.1 kB) Collecting wquantiles==0.6 (from -r requirements-freeze.txt (line 113)) Downloading wquantiles-0.6-py3-none-any.whl (3.3 kB) Collecting wrapt==1.15.0 (from -r requirements-freeze.txt (line 114)) Downloading wrapt-1.15.0-cp39-cp39-macosx_10_9_x86_64.whl (35 kB) Collecting XlsxWriter==3.1.2 (from -r requirements-freeze.txt (line 115)) Obtaining dependency information for XlsxWriter==3.1.2 from https://files.pythonhosted.org/packages/37/94/25d3ec8587974de7ebd790232aa3155abfe44ed23df7ccaa4645977a1cbe/XlsxWriter-3.1.2-py3-none-any.whl.metadata Downloading XlsxWriter-3.1.2-py3-none-any.whl.metadata (2.5 kB) Collecting xlwt==1.3.0 (from -r requirements-freeze.txt (line 116)) Downloading xlwt-1.3.0-py2.py3-none-any.whl (99 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100.0/100.0 kB 3.5 MB/s eta 0:00:00 Collecting zipp==3.16.1 (from -r requirements-freeze.txt (line 117)) Obtaining dependency information for zipp==3.16.1 from https://files.pythonhosted.org/packages/a1/3b/385e3b43200af0b9a13d03c234efbd9d40c6d73ab63fde1c097a2daacdea/zipp-3.16.1-py3-none-any.whl.metadata Downloading zipp-3.16.1-py3-none-any.whl.metadata (3.7 kB) Collecting torchio>=0.18.68 (from ivadomed==2.9.8->-r requirements-freeze.txt (line 39)) Obtaining dependency information for torchio>=0.18.68 from https://files.pythonhosted.org/packages/f6/bd/4009742bfad0f77e2fd7961c64ae822790c538ab5b07e655f9ad52fc18ee/torchio-0.19.1-py2.py3-none-any.whl.metadata Downloading torchio-0.19.1-py2.py3-none-any.whl.metadata (46 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 46.5/46.5 kB 1.4 MB/s eta 0:00:00 Collecting torch<=1.11.0,>=1.8.1 (from ivadomed==2.9.8->-r requirements-freeze.txt (line 39)) Downloading https://download.pytorch.org/whl/cpu/torch-1.11.0-cp39-none-macosx_10_9_x86_64.whl (129.9 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 129.9/129.9 MB 31.8 MB/s eta 0:00:00 Collecting torchvision<=0.12.0,>=0.9.1 (from ivadomed==2.9.8->-r requirements-freeze.txt (line 39)) Downloading https://download.pytorch.org/whl/torchvision-0.12.0-cp39-cp39-macosx_10_9_x86_64.whl (1.2 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 26.6 MB/s eta 0:00:00 Collecting setuptools (from nibabel==3.2.2->-r requirements-freeze.txt (line 53)) Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/b8/49/b3b29c52b09075fb77f69309763a563b4054d5808a3f3b95df3a62ef3d3f/setuptools-68.1.0-py3-none-any.whl.metadata Downloading setuptools-68.1.0-py3-none-any.whl.metadata (6.2 kB) Collecting coverage[toml]>=5.2.1 (from pytest-cov==4.1.0->-r requirements-freeze.txt (line 77)) Obtaining dependency information for coverage[toml]>=5.2.1 from https://files.pythonhosted.org/packages/d3/5e/0278a108b3fed55a4c9d6f21e1fc0ed3c081e18da2a9c716cffbb75c2d20/coverage-7.3.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata Downloading coverage-7.3.0-cp39-cp39-macosx_10_9_x86_64.whl.metadata (8.1 kB) Collecting wheel>=0.26 (from tensorboard==2.13.0->-r requirements-freeze.txt (line 99)) Obtaining dependency information for wheel>=0.26 from https://files.pythonhosted.org/packages/28/f5/6955d7b3a5d71ce6bac104f9cf98c1b0513ad656cdaca8ea7d579196f771/wheel-0.41.1-py3-none-any.whl.metadata Downloading wheel-0.41.1-py3-none-any.whl.metadata (2.2 kB) INFO: pip is looking at multiple versions of coverage[toml] to determine which version is compatible with other requirements. This could take a while. Downloading bids_validator-1.12.0-py2.py3-none-any.whl (21 kB) Downloading cachetools-5.3.1-py3-none-any.whl (9.3 kB) Downloading charset_normalizer-3.2.0-cp39-cp39-macosx_10_9_x86_64.whl (126 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 126.4/126.4 kB 4.2 MB/s eta 0:00:00 Downloading click-8.1.5-py3-none-any.whl (98 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.1/98.1 kB 3.4 MB/s eta 0:00:00 Downloading contourpy-1.1.0-cp39-cp39-macosx_10_9_x86_64.whl (243 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 243.7/243.7 kB 8.7 MB/s eta 0:00:00 Downloading coverage-7.2.7-cp39-cp39-macosx_10_9_x86_64.whl (200 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 200.7/200.7 kB 7.4 MB/s eta 0:00:00 Downloading Deprecated-1.2.14-py2.py3-none-any.whl (9.6 kB) Downloading exceptiongroup-1.1.2-py3-none-any.whl (14 kB) Downloading flatbuffers-23.5.26-py2.py3-none-any.whl (26 kB) Downloading fonttools-4.41.0-cp39-cp39-macosx_10_9_x86_64.whl (2.1 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.1/2.1 MB 16.1 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2.1/2.1 MB 44.1 MB/s eta 0:00:00 Downloading Werkzeug-2.3.6-py3-none-any.whl (242 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 242.5/242.5 kB 8.0 MB/s eta 0:00:00 Downloading XlsxWriter-3.1.2-py3-none-any.whl (153 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 153.0/153.0 kB 5.7 MB/s eta 0:00:00 Downloading zipp-3.16.1-py3-none-any.whl (7.2 kB) Downloading setuptools-68.1.0-py3-none-any.whl (805 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 805.2/805.2 kB 24.1 MB/s eta 0:00:00 Downloading torchio-0.19.1-py2.py3-none-any.whl (172 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 172.8/172.8 kB 5.8 MB/s eta 0:00:00 Downloading wheel-0.41.1-py3-none-any.whl (64 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 64.8/64.8 kB 2.2 MB/s eta 0:00:00 Building wheels for collected packages: docopt, greenlet, lxml, pathtools, pystrum, transforms3d Building wheel for docopt (setup.py): started Building wheel for docopt (setup.py): finished with status 'done' Created wheel for docopt: filename=docopt-0.6.2-py2.py3-none-any.whl size=13705 sha256=e670eda083e0413aa3c513ca0f253c40b306ffa1ab6a1ce73d2d231c3f765b08 Stored in directory: /Users/FMUHAMMA/Library/Caches/pip/wheels/70/4a/46/1309fc853b8d395e60bafaf1b6df7845bdd82c95fd59dd8d2b Building wheel for greenlet (setup.py): started Building wheel for greenlet (setup.py): finished with status 'error' error: subprocess-exited-with-error × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [316 lines of output] running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.9-x86_64-cpython-39 creating build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet creating build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform creating build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_version.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_weakref.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_gc.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/leakcheck.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_generator.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_greenlet_trash.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_throw.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_tracing.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_cpp.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_contextvars.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_greenlet.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_extension_interface.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_generator_nested.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_stack_saved.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/test_leaks.py -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests running egg_info writing src/greenlet.egg-info/PKG-INFO writing dependency_links to src/greenlet.egg-info/dependency_links.txt writing requirements to src/greenlet.egg-info/requires.txt writing top-level names to src/greenlet.egg-info/top_level.txt reading manifest file 'src/greenlet.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching 'benchmarks/*.json' no previously-included directories found matching 'docs/_build' warning: no files found matching '*.py' under directory 'appveyor' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyd' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.coverage' found anywhere in distribution adding license file 'LICENSE' adding license file 'LICENSE.PSF' adding license file 'AUTHORS' writing manifest file 'src/greenlet.egg-info/SOURCES.txt' copying src/greenlet/greenlet.cpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_allocator.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_compiler_compat.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_cpython_compat.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_exceptions.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_greenlet.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_internal.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_refs.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_slp_switch.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_thread_state.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_thread_state_dict_cleanup.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/greenlet_thread_support.hpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/slp_platformselect.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet copying src/greenlet/platform/setup_switch_x64_masm.cmd -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_aarch64_gcc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_alpha_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_amd64_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_arm32_gcc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_arm32_ios.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_arm64_masm.asm -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_arm64_masm.obj -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_arm64_msvc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_csky_gcc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_m68k_gcc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_mips_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_ppc64_aix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_ppc64_linux.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_ppc_aix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_ppc_linux.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_ppc_macosx.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_ppc_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_riscv_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_s390_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_sparc_sun_gcc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_x32_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_x64_masm.asm -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_x64_masm.obj -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_x64_msvc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_x86_msvc.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/platform/switch_x86_unix.h -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/platform copying src/greenlet/tests/_test_extension.c -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests copying src/greenlet/tests/_test_extension_cpp.cpp -> build/lib.macosx-10.9-x86_64-cpython-39/greenlet/tests running build_ext building 'greenlet._greenlet' extension creating build/temp.macosx-10.9-x86_64-cpython-39 creating build/temp.macosx-10.9-x86_64-cpython-39/src creating build/temp.macosx-10.9-x86_64-cpython-39/src/greenlet clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include -arch x86_64 -I/Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include -fPIC -O2 -isystem /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include -arch x86_64 -I/Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include/python3.9 -c src/greenlet/greenlet.cpp -o build/temp.macosx-10.9-x86_64-cpython-39/src/greenlet/greenlet.o --std=gnu++11 In file included from src/greenlet/greenlet.cpp:9: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:87: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/stdlib.h:150:34: error: unknown type name 'ldiv_t' inline _LIBCPP_INLINE_VISIBILITY ldiv_t div(long __x, long __y) _NOEXCEPT { ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/stdlib.h:151:12: error: no member named 'ldiv' in the global namespace return ::ldiv(__x, __y); ~~^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/stdlib.h:154:34: error: unknown type name 'lldiv_t' inline _LIBCPP_INLINE_VISIBILITY lldiv_t div(long long __x, ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/stdlib.h:156:12: error: no member named 'lldiv' in the global namespace return ::lldiv(__x, __y); ~~^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/comp_ref_type.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__debug:16: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstddef:61:9: error: target of using declaration conflicts with declaration already in scope using ::size_t _LIBCPP_USING_IF_EXISTS; ^ /Users/fmuhamma/Downloads/yes/lib/clang/14.0.6/include/stddef.h:46:23: note: target of using declaration typedef __SIZE_TYPE__ size_t; ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: conflicting declaration using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/constructible.h:12: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/convertible_to.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/is_convertible.h:14: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/is_array.h:40:22: error: reference to unresolved using declaration template struct _LIBCPP_TEMPLATE_VIS is_array<_Tp[_Np]> ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/constructible.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/destructible.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/is_nothrow_destructible.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/is_destructible.h:16: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/remove_all_extents.h:34:22: error: reference to unresolved using declaration template struct _LIBCPP_TEMPLATE_VIS remove_all_extents<_Tp[_Np]> ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/constructible.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/destructible.h:13: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/is_nothrow_destructible.h:49:22: error: reference to unresolved using declaration template ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:12: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/assignable.h:12: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/common_reference_with.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/common_reference.h:13: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/common_type.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/decay.h:19: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/remove_extent.h:34:22: error: reference to unresolved using declaration template struct _LIBCPP_TEMPLATE_VIS remove_extent<_Tp[_Np]> ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/movable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/swappable.h:17: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/extent.h:24:21: error: reference to unresolved using declaration template ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/movable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/swappable.h:17: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/extent.h:26:25: error: reference to unresolved using declaration : integral_constant { }; ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/movable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/swappable.h:17: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/extent.h:26:25: error: reference to unresolved using declaration : integral_constant { }; ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/movable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/swappable.h:24: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__utility/swap.h:17: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/is_swappable.h:51:21: error: reference to unresolved using declaration template ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/movable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/swappable.h:24: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__utility/swap.h:44:22: error: reference to unresolved using declaration template ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:16: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/copyable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/movable.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__concepts/swappable.h:24: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__utility/swap.h:47:8: error: reference to unresolved using declaration for (size_t __i = 0; __i != _Np; ++__i) { ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:22: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/incrementable_traits.h:18: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/make_signed.h:18: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/type_list.h:28:28: error: reference to unresolved using declaration template struct __find_first; ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:22: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/incrementable_traits.h:18: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/make_signed.h:18: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/type_list.h:30:33: error: reference to unresolved using declaration template ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:14: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max_element.h:15: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/iterator_traits.h:22: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__iterator/incrementable_traits.h:18: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/make_signed.h:18: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__type_traits/type_list.h:36:33: error: reference to unresolved using declaration template ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ In file included from src/greenlet/greenlet.cpp:10: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/string:537: In file included from /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/__algorithm/max.h:16: /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/initializer_list:62:5: error: reference to unresolved using declaration size_t __size_; ^ /Users/fmuhamma/Downloads/yes/bin/../include/c++/v1/cstdlib:103:1: note: using declaration annotated with 'using_if_exists' here using ::size_t _LIBCPP_USING_IF_EXISTS; ^ fatal error: too many errors emitted, stopping now [-ferror-limit=] 20 errors generated. error: command '/Users/fmuhamma/Downloads/yes/bin/clang' failed with exit code 1 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for greenlet Running setup.py clean for greenlet Building wheel for lxml (setup.py): started Building wheel for lxml (setup.py): finished with status 'error' error: subprocess-exited-with-error × python setup.py bdist_wheel did not run successfully. │ exit code: 1 ╰─> [137 lines of output] Building lxml version 4.9.3. /private/var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/pip-install-d4ng8u_2/lxml_e28db34f56304191ad7f2b51537d07ed/setup.py:67: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import pkg_resources Building without Cython. Building against libxml2 2.10.3 and libxslt 1.1.37 Building against libxml2/libxslt in one of the following directories: /Users/fmuhamma/Downloads/yes/lib /Users/fmuhamma/Downloads/yes/lib /Users/fmuhamma/Downloads/yes/lib /Users/fmuhamma/Downloads/yes/lib /Users/fmuhamma/Downloads/yes/lib running bdist_wheel running build running build_py creating build creating build/lib.macosx-10.9-x86_64-cpython-39 creating build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/_elementpath.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/sax.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/pyclasslookup.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/builder.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/doctestcompare.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/usedoctest.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/cssselect.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/ElementInclude.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/soupparser.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/defs.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/_setmixin.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/clean.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/_diffcommand.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/html5parser.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/formfill.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/builder.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/ElementSoup.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/_html5builder.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/usedoctest.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html copying src/lxml/html/diff.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/html creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron copying src/lxml/isoschematron/__init__.py -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron copying src/lxml/etree.h -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/etree_api.h -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/lxml.etree.h -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/lxml.etree_api.h -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/objectify.pyx -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/etree.pyx -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/public-api.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xmlid.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/cleanup.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xslt.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xpath.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/debug.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/serializer.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/classlookup.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/saxparser.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/objectpath.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/relaxng.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xinclude.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/iterparse.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/parser.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/dtd.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/apihelpers.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xmlerror.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/readonlytree.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/extensions.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xmlschema.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/schematron.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/docloader.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/nsclasses.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/parsertarget.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/xsltext.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/proxy.pxi -> build/lib.macosx-10.9-x86_64-cpython-39/lxml copying src/lxml/includes/xmlerror.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/c14n.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/xmlschema.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/__init__.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/schematron.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/tree.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/uri.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/etreepublic.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/xpath.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/htmlparser.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/xslt.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/config.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/xmlparser.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/xinclude.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/dtdvalid.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/relaxng.pxd -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/lxml-version.h -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes copying src/lxml/includes/etree_defs.h -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/includes creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/rng copying src/lxml/isoschematron/resources/rng/iso-schematron.rng -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/rng creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl copying src/lxml/isoschematron/resources/xsl/XSD2Schtrn.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl copying src/lxml/isoschematron/resources/xsl/RNG2Schtrn.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl creating build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_abstract_expand.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_dsdl_include.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_schematron_skeleton_for_xslt1.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_svrl_for_xslt1.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/iso_schematron_message.xsl -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 copying src/lxml/isoschematron/resources/xsl/iso-schematron-xslt1/readme.txt -> build/lib.macosx-10.9-x86_64-cpython-39/lxml/isoschematron/resources/xsl/iso-schematron-xslt1 running build_ext building 'lxml.etree' extension creating build/temp.macosx-10.9-x86_64-cpython-39 creating build/temp.macosx-10.9-x86_64-cpython-39/src creating build/temp.macosx-10.9-x86_64-cpython-39/src/lxml clang -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -fwrapv -O2 -Wall -fPIC -O2 -isystem /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include -arch x86_64 -I/Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include -fPIC -O2 -isystem /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include -arch x86_64 -DCYTHON_CLINE_IN_TRACEBACK=0 -I/Users/fmuhamma/Downloads/yes/include/libxml2 -I/Users/fmuhamma/Downloads/yes/include -Isrc -Isrc/lxml/includes -I/Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include/python3.9 -c src/lxml/etree.c -o build/temp.macosx-10.9-x86_64-cpython-39/src/lxml/etree.o -w -flat_namespace In file included from src/lxml/etree.c:96: /Users/FMUHAMMA/sct_6.0/python/envs/venv_sct/include/python3.9/Python.h:25:10: fatal error: 'stdio.h' file not found #include ^~~~~~~~~ 1 error generated. Compile failed: command '/Users/fmuhamma/Downloads/yes/bin/clang' failed with exit code 1 creating var creating var/folders creating var/folders/9y creating var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp creating var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T cc -I/Users/fmuhamma/Downloads/yes/include/libxml2 -I/Users/fmuhamma/Downloads/yes/include -I/usr/include/libxml2 -c /var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/xmlXPathInitn4j2aph0.c -o var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/xmlXPathInitn4j2aph0.o /var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/xmlXPathInitn4j2aph0.c:3:5: warning: 'xmlXPathInit' is deprecated [-Wdeprecated-declarations] xmlXPathInit(); ^ /Users/fmuhamma/Downloads/yes/include/libxml2/libxml/xpath.h:562:1: note: 'xmlXPathInit' has been explicitly marked deprecated here XML_DEPRECATED ^ /Users/fmuhamma/Downloads/yes/include/libxml2/libxml/xmlversion.h:464:43: note: expanded from macro 'XML_DEPRECATED' # define XML_DEPRECATED __attribute__((deprecated)) ^ 1 warning generated. cc var/folders/9y/fz81lr6n7yx98800mstcqgb80000gp/T/xmlXPathInitn4j2aph0.o -L/Users/fmuhamma/Downloads/yes/lib -L/Users/fmuhamma/Downloads/yes/lib -L/Users/fmuhamma/Downloads/yes/lib -L/Users/fmuhamma/Downloads/yes/lib -L/Users/fmuhamma/Downloads/yes/lib -lxml2 -o a.out error: command '/Users/fmuhamma/Downloads/yes/bin/clang' failed with exit code 1 [end of output] note: This error originates from a subprocess, and is likely not a problem with pip. ERROR: Failed building wheel for lxml Running setup.py clean for lxml Building wheel for pathtools (setup.py): started Building wheel for pathtools (setup.py): finished with status 'done' Created wheel for pathtools: filename=pathtools-0.1.2-py3-none-any.whl size=8791 sha256=d36d68fa94c7c1dc25b3eba36a0943a6c1564a2cf5b02f25ad89bd7a989ae2f4 Stored in directory: /Users/FMUHAMMA/Library/Caches/pip/wheels/b7/0a/67/ada2a22079218c75a88361c0782855cc72aebc4d18d0289d05 Building wheel for pystrum (setup.py): started Building wheel for pystrum (setup.py): finished with status 'done' Created wheel for pystrum: filename=pystrum-0.3-py3-none-any.whl size=19531 sha256=1e1e01f9016c17c9e5ea8457d2a0c2b2068a0569bdc1bc3a9f5a0021f507da72 Stored in directory: /Users/FMUHAMMA/Library/Caches/pip/wheels/f2/e8/88/272d134f1260c0e945a4ca0b5358c19d861e12aea280f759ea Building wheel for transforms3d (setup.py): started Building wheel for transforms3d (setup.py): finished with status 'done' Created wheel for transforms3d: filename=transforms3d-0.4.1-py3-none-any.whl size=1376757 sha256=f6b69f862dd5e5343181e577be1c2e690228feee2d5d1c98eb236a1eb5369800 Stored in directory: /Users/FMUHAMMA/Library/Caches/pip/wheels/a5/2d/e4/5d7de7a69ab4e6301b3125441725d47fe25b9e60e7d670ad21 Successfully built docopt pathtools pystrum transforms3d Failed to build greenlet lxml ERROR: Could not build wheels for greenlet, lxml, which is required to install pyproject.toml-based projects Failed running pip install: 1 Installation failed! Please find the file "/Users/FMUHAMMA/sct_6.0/install_sct_log.txt", then upload it as a .txt attachment in a new topic on SCT's forum: --> http://forum.spinalcordmri.org/c/sct