Sorry for yet another post, but…
I ran sct_label_vertebrae from release 3.2.7 on 12 datasets last week, and, as far as I can recall, it worked fine on all datasets. I recently downloaded v4.0.0-beta.2 and re-ran sct_label_vertebrae on the same 12 datasets – and it failed on one dataset. The text and image outputs from sct_deepseg_sc and sct_label_vertebrae from this one subject are attached. Any insight into what’s going on would be greatly appreciated. Thank you.
SCT_20190418_ver_4_0_0_beta_2.txt (5.1 KB)