Thanks Charley,
Will work on it now.
Cheers
Thanks all,
Here is what happened,
I did put run the renamed code it it gave me this message:
INSTALLING MODEL: mice_uqueensland_sc
Trying URL: https://osf.io/nu3ma/download?version=4
Downloading: mice_uqueensland_sc.zip
Status: 100%|██████████████████████████████| 4.27M/4.27M [00:00<00:00, 4.78MB/s]
Creating temporary folder (/var/folders/n7/vy388txx7p93lty1hfh5n6ym0000gn/T/sct-20200518105249.285148-5ul7nq4u)
Unzip data to: /var/folders/n7/vy388txx7p93lty1hfh5n6ym0000gn/T/sct-20200518105249.285148-5ul7nq4u
Destination folder: /Users/abdullahalthobity/Desktop/T1_All/sct-dev/data/deepseg_models
Checking if folder already exists…
Removing temporary folders…
if I continue and run for example:
sct_deepseg -i T1_423.nii.gz -m mice_uqueensland_sc
I got this message:
Spinal Cord Toolbox (git-jca/2626-deepseg-6ca89f4c593bdfea924fa9a4dd6777cf99777c9c)
Traceback (most recent call last):
File “/Users/abdullahalthobity/Desktop/T1_All/sct-dev/scripts/sct_deepseg.py”, line 168, in
main()
File “/Users/abdullahalthobity/Desktop/T1_All/sct-dev/scripts/sct_deepseg.py”, line 139, in main
if args['install_default_models']:
KeyError: ‘install_default_models’
Any suggestions
Cheers
Thanks Charley,
The new model is much better with some slight errors.
I will check it on high quality images then I will give you feedback.
Cheers
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