Latest MRI Processing & SCT topics

Topic	Replies	Views	Activity
➤ New release: SCT v7.1 Dear SCT users, We are happy to announce the release of SCT v7.1. :tada: The most notable changes for this release include: Installation: Add support for Apptainer installations for use on HPC systems. View pull requ…	2	303	August 19, 2025
➤ New release: SCT v7.0 Dear SCT users, We are happy to announce the release of SCT v7.0. :tada: The most notable changes for this major release include: Feature: Overhauled sct_deepseg syntax, interface, and model names. View Model Gallery …	7	397	August 19, 2025
📣 New release: SCT v6.3 Dear SCT users, We are happy to announce the release of SCT v6.3. :tada: The most notable changes for this release include: Feature: Add QC report for sct_deepseg. View pull request Feature: Add CanProCo-based MS les…	3	667	August 9, 2024
Fail to install SCT on Ubuntu 22.04	4	193	October 29, 2025
Seeking sct_register_to_template suggestions registration	1	93	October 28, 2025
New problems about the atlas pics	3	196	October 12, 2025
"No matching distribution found for onnxruntime==1.21.1" error when installing SCT v7.1	5	307	October 10, 2025
Some problems with MSCC	3	192	September 24, 2025
"Joint PDF summed to zero" error at the motion correction step for DTI algorithm	4	481	September 22, 2025
"Joint PDF summed to zero" error encountered during motion correction step	8	808	September 3, 2025
How to compute CSA from brain data	4	1728	August 30, 2025
Some questions about the registering template to dMRI of lumbar enlargement area	13	461	August 19, 2025
Installing SCT-7.0; Undefined symbol in ../site-packages/PyQt5/QtCore.so	11	514	August 19, 2025
Local DTI extraction results don't match the values given in the tutorial	2	229	August 17, 2025
"max() arg is an empty sequence" error during ANTs check in `sct_check_dependencies`	5	446	August 17, 2025
How to stitch together different spinal cord segments' DTI images (e.g., cervical-thoracic, thoracic-lumbar)?	1	445	August 17, 2025
How to upgrade SCT 6.4 to 7.0 on Windows	9	514	July 25, 2025
Is there a way to segment nerve roots L1–S1 in spinal MRI using SCT	1	245	July 23, 2025
How to divide the spinal cord into left and right sides？	6	643	July 23, 2025
Can't install `sct_deepseg` task due to network errors	12	656	July 18, 2025
Spinal Cord Image Quality Metrics	2	281	July 18, 2025
SCT v6.5 installation fails due to "failed to connect to github.com" error	11	541	July 10, 2025
Issue with C2-C5 volume	1	263	July 3, 2025
Issue with Motion correction and size of data	3	465	June 12, 2025
Issue installing sct 7.0 on linux	3	368	June 6, 2025
Issue with Spinal Cord Toolbox GPU Installation	2	382	May 29, 2025
Further subdivide the segmented gray matter and white matter regions of interest	7	391	May 28, 2025
Windows SCT v6.1 installation error: "git not found" even though git is installed	6	1100	May 12, 2025
Advice on using CSF signal for fMRI denoising	6	499	April 30, 2025
Problems with gray matter segmentation	16	733	April 29, 2025

➤ New release: SCT v7.1

Dear SCT users, We are happy to announce the release of SCT v7.1. :tada: The most notable changes for this release include: Installation: Add support for Apptainer installations for use on HPC systems. View pull requ…

2

303

August 19, 2025

➤ New release: SCT v7.0

Dear SCT users, We are happy to announce the release of SCT v7.0. :tada: The most notable changes for this major release include: Feature: Overhauled sct_deepseg syntax, interface, and model names. View Model Gallery …

7

397

August 19, 2025

📣 New release: SCT v6.3

Dear SCT users, We are happy to announce the release of SCT v6.3. :tada: The most notable changes for this release include: Feature: Add QC report for sct_deepseg. View pull request Feature: Add CanProCo-based MS les…

3

667

August 9, 2024

Fail to install SCT on Ubuntu 22.04