Confused label for cervical spine with DCM

Thank you so much
I hope to be received support from SCM group.

  1. The image is an MRI of a patient with severe Deformitive cervical myelopathy due to cervical disc herniation and spinal stenosis. I intend to define the CSA however when I execute the command sct_label_vertebrae it is not in the correct anatomical position (attached).
    I am looking forward to receiving support from the group to solve this problem (I only have DICOM files t1 saggital, t2 saggital)

Thank you in advance.


It looks like the automatic labeling failed. I suggest you do a semi-manual labeling, see the tutorial.


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