Deepseg_lesion not working

Hi,

I’m trying to use deepseg to detect lesions on t2 MRI Scans (both spinal cord and brain scans with cervical cord portions), but I’ve tried it on 3 different Scans without success so far. The first two were a spinal and a brain scan from the same patient with one very clear lesion. Deepseg did not detect this lesion at all. The last was a spinal cord scan from a different patient. Deepseg did detect this lesion, but not fully/accurately.

Are there any options for editing images or refining the command line to improve deepseg_lesion? (For the brain scans with cervical cord portions I already used the options -centerline -CNN -brain 1).

Thank you,
Amba

hi
thank you for your feedback. could you send me those data in private and we will give it a try.

Hi,

The website does not allow me to send you a personal message. Where can I send you the data?

Thank you

jcohen [at] polymtl.ca