Hey!
I commented this on this post but I thought it was due to Matlab.
Running sct_label_utils
from terminal also gives me the warning from Matplotlib
sct_label_utils -i $T1File -create-viewer 3 -o c3label.nii.gz
Spinal Cord Toolbox (4.3)
/home/sct_4.3/spinalcordtoolbox/gui/widgets.py:12: MatplotlibDeprecationWarning:
The matplotlib.backends.backend_qt4agg backend was deprecated in Matplotlib 3.3 and will be removed two minor releases later.
from matplotlib.backends.backend_qt4agg import FigureCanvasQTAgg as FigureCanvas
Since it’s a warning I can still select c3 from the GUI and everything runs smoothly.
Running ``sct_check_dependencies` gives me
sct_check_dependencies
--
Spinal Cord Toolbox (4.3)
SCT info:
- version: 4.3
- path: /home/sct_4.3
OS: linux (Linux-5.3.0-62-generic-x86_64-with-debian-buster-sid)
CPU cores: Available: 12, Used by SCT: 12
RAM: MemTotal: 131596272 kB
total usado libre compartido búfer/caché disponible
Memoria: 128511 9071 1654 405 117785 117812
Swap: 975 2 973
Check Python executable.............................[OK]
Using bundled python 3.6.12 |Anaconda, Inc.| (default, Sep 8 2020, 23:10:56)
[GCC 7.3.0] at /home/sct_4.3/python/envs/venv_sct/bin/python
Check if torch (1.5.0+cpu) is installed.............[WARNING] (1.6.0 != 1.5.0+cpu mandated version))
Check if torchvision (0.6.0+cpu) is installed.......[WARNING] (0.7.0 != 0.6.0+cpu mandated version))
All the other dependencies are [OK]. Can this difference in torch and torchvision be the reason?
Cheers!