Dear SCT TEAM,
I’ve been trying to install SCT under Ubuntu 16.04 .but It seems to have some problems.
SCT info:
- version: dev
- path: /home/abc/sct_dev
OS: linux (Linux-5.4.0-52-generic-x86_64-with-debian-buster-sid)
CPU cores: Available: 8, Used by ITK functions: 8
RAM: Total: 6954MB, Used: 2320MB, Available: 4096MB
Check Python executable…[WARNING]
Using system python which is unsupported: /home/abc/miniconda3/bin/python
Check if data are installed…[FAIL]
Check if colored is installed…[OK] (1.4.2)
Check if dipy is installed…[OK] (1.2.0)
Check if futures is installed…[OK]
Check if h5py is installed…[OK] (2.10.0)
Check if ivadomed (2.0.2) is installed…[OK] (2.0.2)
Check if Keras (2.1.5) is installed…[OK] (2.1.5)
Check if matplotlib is installed…[OK] (3.3.2)
Check if nibabel is installed…[OK] (3.2.0)
Check if numpy is installed…[OK] (1.19.4)
Check if psutil is installed…[OK] (5.7.3)
Check if pyqt5 (5.11.3) is installed…[OK] (5.11.3)
Check if pytest is installed…[OK] (6.1.2)
Check if pytest-cov is installed…[OK] (version = ‘2.10.1’)
Check if raven is installed…[OK]
Check if requests is installed…[OK] (2.18.4)
Check if requirements-parser is installed…[OK] (0.2.0)
Check if scipy is installed…[OK] (1.5.3)
Check if scikit-image is installed…[OK] (0.17.2)
Check if scikit-learn is installed…[OK] (0.23.2)
Check if tensorflow (1.5.0) is installed…[OK] (1.5.0)
Check if xlwt is installed…[OK] (1.3.0)
Check if tqdm is installed…[OK] (4.51.0)
Check if transforms3d is installed…[OK] (0.3.1)
Check if urllib3 is installed…[OK] (1.22)
Check if pytest_console_scripts is installed…[OK]
Check if pytest-xdist is installed…[OK] (2.1.0)
Check if spinalcordtoolbox is installed…[OK]
Check ANTs compatibility with OS …[OK]
Check PropSeg compatibility with OS …[OK]
Check if DISPLAY variable is set…[OK]
Check if figure can be opened with PyQt…[OK]
Any help would be greatly appreciated!
Hi,
It looks like the installation was improperly done: there is a discrepancy between the source of SCT install folder /home/abc/sct_dev and the location of the python binary /home/abc/miniconda3/bin/python, which should instead be a miniconda virtual environment created under /home/abc/sct_dev/python.
Could you please copy/paste the entire terminal output of your installation, including the syntax you wrote, so we can assess what went wrong.
Hi， Julien. thanks a lot! My colleagues have previously modified the parts of the contents of SCT_install.txt, which I think may be related to the installation failure. I have uninstalled and reinstalled the SCT. Now the SCT testing is ok.I am now installing FSL, but these problems have occurred.(Since I am in China, I have modified the source of Conda to the mirror source of Tsinghua University)
(venv_sct) abc@123:~$ yes | conda install -c conda-forge fsleyes
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): / WARNING conda.models.version:get_matcher(528): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 3.6., but conda is ignoring the . and treating it as 3.6
- WARNING conda.models.version:get_matcher(528): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 2., but conda is ignoring the . and treating it as 2
| WARNING conda.models.version:get_matcher(528): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1., but conda is ignoring the . and treating it as 1
done
Thanks for your help!
Hi @Alexander_Zhang,
These are warnings, not error.
I tried to reproduce on my end, and noticed that the installation paused for ~5min at the line that says Solving environment: done, and then it resumed and completed successfully.
Here is my full terminal output
(venv_sct) julien-macbook:~/code/sct $ yes | conda install -c conda-forge fsleyes
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): \ WARNING conda.models.version:get_matcher(531): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 2.*, but conda is ignoring the .* and treating it as 2
- WARNING conda.models.version:get_matcher(531): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 3.6.*, but conda is ignoring the .* and treating it as 3.6
- WARNING conda.models.version:get_matcher(531): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.*, but conda is ignoring the .* and treating it as 1
done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.7.11
latest version: 4.9.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/julien/code/sct/python/envs/venv_sct
added / updated specs:
- fsleyes
The following packages will be downloaded:
package | build
---------------------------|-----------------
appnope-0.1.0 |py36h9f0ad1d_1002 9 KB conda-forge
argon2-cffi-20.1.0 | py36h9de38fb_2 45 KB conda-forge
backports.lzma-0.0.14 | py36h57f1d8f_3 48 KB conda-forge
brotlipy-0.7.0 |py36ha3de816_1001 357 KB conda-forge
cached-property-1.5.1 | py_0 10 KB conda-forge
certifi-2020.6.20 | py36h2432673_2 151 KB conda-forge
cffi-1.11.5 | py36_0 210 KB conda-forge
chardet-3.0.4 |py36h2432673_1008 193 KB conda-forge
cryptography-3.2.1 | py36h564ae50_0 615 KB conda-forge
dataclasses-0.7 | pyhe4b4509_6 21 KB conda-forge
docutils-0.16 | py36h2432673_2 739 KB conda-forge
entrypoints-0.3 |py36h9f0ad1d_1002 13 KB conda-forge
freetype-2.10.4 | h3f75d11_0 897 KB conda-forge
fsleyes-0.32.3 | py36_0 29.9 MB conda-forge
h5py-3.1.0 |nompi_py36ha337fa9_100 1.1 MB conda-forge
indexed_gzip-1.3.2 | py36h57d03b6_1 407 KB conda-forge
ipykernel-5.3.4 | py36hac0dd68_1 166 KB conda-forge
ipython-7.16.1 | py36h95af2a2_0 1.1 MB conda-forge
jedi-0.17.2 | py36h9f0ad1d_1 948 KB conda-forge
jpeg-9d | hbcb3906_0 250 KB conda-forge
jupyter_core-4.6.3 | py36h9f0ad1d_2 72 KB conda-forge
kiwisolver-1.2.0 | py36h863e41a_0 57 KB conda-forge
lcms2-2.11 | h11f7e16_1 387 KB conda-forge
libblas-3.9.0 | 2_openblas 11 KB conda-forge
libcblas-3.9.0 | 2_openblas 11 KB conda-forge
liblapack-3.9.0 | 2_openblas 11 KB conda-forge
libopenblas-0.3.12 |openmp_h63d9170_1 8.7 MB conda-forge
libpng-1.6.37 | h7cec526_2 313 KB conda-forge
libwebp-base-1.1.0 | hbcb3906_3 757 KB conda-forge
markupsafe-1.1.1 | py36ha3de816_2 25 KB conda-forge
matplotlib-base-3.3.0 | py36h534ab7b_1 6.8 MB conda-forge
mistune-0.8.4 |py36h9de38fb_1002 54 KB conda-forge
nbconvert-6.0.7 | py36h9f0ad1d_2 519 KB conda-forge
nest-asyncio-1.4.2 | pyhd8ed1ab_0 9 KB conda-forge
notebook-6.1.4 | py36h9f0ad1d_1 6.3 MB conda-forge
numpy-1.19.4 | py36hffbcf66_0 5.0 MB conda-forge
pandoc-2.11.0.4 | h22f3db7_0 14.0 MB conda-forge
pathlib2-2.3.5 | py36h79c6626_2 35 KB conda-forge
pillow-8.0.1 | py36hc86fed5_0 642 KB conda-forge
pydicom-2.1.0 | pyhd3deb0d_0 1.3 MB conda-forge
pygments-2.7.2 | py_0 707 KB conda-forge
pyrsistent-0.17.3 | py36h9de38fb_1 87 KB conda-forge
pysocks-1.7.1 | py36h2432673_2 27 KB conda-forge
python.app-1.3 | py36h9de38fb_3 12 KB conda-forge
python_abi-3.6 | 1_cp36m 4 KB conda-forge
pytz-2020.4 | pyhd8ed1ab_0 229 KB conda-forge
pyzmq-19.0.1 | py36h820b253_0 443 KB conda-forge
rtree-0.9.4 | py36he053a7a_1 43 KB conda-forge
scipy-1.5.1 | py36h1dac7e4_0 19.1 MB conda-forge
sphinx-3.3.0 | pyhd8ed1ab_0 1.5 MB conda-forge
terminado-0.9.1 | py36h9f0ad1d_1 25 KB conda-forge
tornado-6.1 | py36h6941dd6_0 642 KB conda-forge
traitlets-4.3.3 | py36h9f0ad1d_1 133 KB conda-forge
trimesh-3.8.12 | pyh9f0ad1d_0 505 KB conda-forge
wxpython-4.0.6 | py36h1cd7e00_1 15.2 MB conda-forge
zipp-3.4.0 | py_0 11 KB conda-forge
------------------------------------------------------------
Total: 120.5 MB
The following NEW packages will be INSTALLED:
alabaster conda-forge/noarch::alabaster-0.7.12-py_0
appnope conda-forge/osx-64::appnope-0.1.0-py36h9f0ad1d_1002
argon2-cffi conda-forge/osx-64::argon2-cffi-20.1.0-py36h9de38fb_2
async_generator conda-forge/noarch::async_generator-1.10-py_0
attrs conda-forge/noarch::attrs-20.2.0-pyh9f0ad1d_0
babel conda-forge/noarch::babel-2.8.0-py_0
backcall conda-forge/noarch::backcall-0.2.0-pyh9f0ad1d_0
backports conda-forge/noarch::backports-1.0-py_2
backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.1-py_0
backports.lzma conda-forge/osx-64::backports.lzma-0.0.14-py36h57f1d8f_3
bleach conda-forge/noarch::bleach-3.2.1-pyh9f0ad1d_0
brotlipy conda-forge/osx-64::brotlipy-0.7.0-py36ha3de816_1001
cached-property conda-forge/noarch::cached-property-1.5.1-py_0
cffi conda-forge/osx-64::cffi-1.11.5-py36_0
chardet conda-forge/osx-64::chardet-3.0.4-py36h2432673_1008
cryptography conda-forge/osx-64::cryptography-3.2.1-py36h564ae50_0
cycler conda-forge/noarch::cycler-0.10.0-py_2
dataclasses conda-forge/noarch::dataclasses-0.7-pyhe4b4509_6
dcm2niix conda-forge/osx-64::dcm2niix-1.0.20181114-h04f5b5a_1000
decorator conda-forge/noarch::decorator-4.4.2-py_0
defusedxml conda-forge/noarch::defusedxml-0.6.0-py_0
docutils conda-forge/osx-64::docutils-0.16-py36h2432673_2
entrypoints conda-forge/osx-64::entrypoints-0.3-py36h9f0ad1d_1002
expat conda-forge/osx-64::expat-2.2.9-h4a8c4bd_2
freetype conda-forge/osx-64::freetype-2.10.4-h3f75d11_0
fsleyes conda-forge/osx-64::fsleyes-0.32.3-py36_0
fsleyes-props conda-forge/noarch::fsleyes-props-1.7.0-py_0
fsleyes-widgets conda-forge/noarch::fsleyes-widgets-0.9.0-py_1
fslpy conda-forge/noarch::fslpy-3.4.0-pyh7b7c402_0
gettext conda-forge/osx-64::gettext-0.19.8.1-h1f1d5ed_1
h5py conda-forge/osx-64::h5py-3.1.0-nompi_py36ha337fa9_100
hdf5 conda-forge/osx-64::hdf5-1.10.6-nompi_h3e39495_100
idna conda-forge/noarch::idna-2.10-pyh9f0ad1d_0
imagesize conda-forge/noarch::imagesize-1.2.0-py_0
importlib-metadata conda-forge/noarch::importlib-metadata-2.0.0-py_1
importlib_metadata conda-forge/noarch::importlib_metadata-2.0.0-1
indexed_gzip conda-forge/osx-64::indexed_gzip-1.3.2-py36h57d03b6_1
ipykernel conda-forge/osx-64::ipykernel-5.3.4-py36hac0dd68_1
ipython conda-forge/osx-64::ipython-7.16.1-py36h95af2a2_0
ipython_genutils conda-forge/noarch::ipython_genutils-0.2.0-py_1
isodate conda-forge/noarch::isodate-0.6.0-py_1
jedi conda-forge/osx-64::jedi-0.17.2-py36h9f0ad1d_1
jinja2 conda-forge/noarch::jinja2-2.11.2-pyh9f0ad1d_0
jpeg conda-forge/osx-64::jpeg-9d-hbcb3906_0
jsonschema conda-forge/noarch::jsonschema-3.2.0-py_2
jupyter_client conda-forge/noarch::jupyter_client-6.1.7-py_0
jupyter_core conda-forge/osx-64::jupyter_core-4.6.3-py36h9f0ad1d_2
jupyterlab_pygmen~ conda-forge/noarch::jupyterlab_pygments-0.1.2-pyh9f0ad1d_0
kiwisolver conda-forge/osx-64::kiwisolver-1.2.0-py36h863e41a_0
lcms2 conda-forge/osx-64::lcms2-2.11-h11f7e16_1
libblas conda-forge/osx-64::libblas-3.9.0-2_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-2_openblas
libgfortran conda-forge/osx-64::libgfortran-4.0.0-h50e675f_13
libgfortran4 conda-forge/osx-64::libgfortran4-7.5.0-h50e675f_13
libiconv conda-forge/osx-64::libiconv-1.16-haf1e3a3_0
liblapack conda-forge/osx-64::liblapack-3.9.0-2_openblas
libopenblas conda-forge/osx-64::libopenblas-0.3.12-openmp_h63d9170_1
libpng conda-forge/osx-64::libpng-1.6.37-h7cec526_2
libsodium conda-forge/osx-64::libsodium-1.0.17-h01d97ff_0
libspatialindex conda-forge/osx-64::libspatialindex-1.9.3-h4a8c4bd_3
libtiff conda-forge/osx-64::libtiff-4.1.0-h2ae36a8_6
libwebp-base conda-forge/osx-64::libwebp-base-1.1.0-hbcb3906_3
llvm-openmp conda-forge/osx-64::llvm-openmp-11.0.0-h73239a0_1
lz4-c conda-forge/osx-64::lz4-c-1.9.2-h4a8c4bd_1
markupsafe conda-forge/osx-64::markupsafe-1.1.1-py36ha3de816_2
matplotlib-base conda-forge/osx-64::matplotlib-base-3.3.0-py36h534ab7b_1
mistune conda-forge/osx-64::mistune-0.8.4-py36h9de38fb_1002
nbclient conda-forge/noarch::nbclient-0.5.1-py_0
nbconvert conda-forge/osx-64::nbconvert-6.0.7-py36h9f0ad1d_2
nbformat conda-forge/noarch::nbformat-5.0.8-py_0
nest-asyncio conda-forge/noarch::nest-asyncio-1.4.2-pyhd8ed1ab_0
nibabel conda-forge/noarch::nibabel-3.2.0-py_0
notebook conda-forge/osx-64::notebook-6.1.4-py36h9f0ad1d_1
numpy conda-forge/osx-64::numpy-1.19.4-py36hffbcf66_0
olefile conda-forge/noarch::olefile-0.46-pyh9f0ad1d_1
packaging conda-forge/noarch::packaging-20.4-pyh9f0ad1d_0
pandoc conda-forge/osx-64::pandoc-2.11.0.4-h22f3db7_0
pandocfilters conda-forge/noarch::pandocfilters-1.4.2-py_1
parso conda-forge/noarch::parso-0.7.1-pyh9f0ad1d_0
pathlib2 conda-forge/osx-64::pathlib2-2.3.5-py36h79c6626_2
pexpect conda-forge/noarch::pexpect-4.8.0-pyh9f0ad1d_2
pickleshare conda-forge/noarch::pickleshare-0.7.5-py_1003
pillow conda-forge/osx-64::pillow-8.0.1-py36hc86fed5_0
progressbar2 conda-forge/noarch::progressbar2-3.53.1-pyh9f0ad1d_0
prometheus_client conda-forge/noarch::prometheus_client-0.8.0-pyh9f0ad1d_0
prompt-toolkit conda-forge/noarch::prompt-toolkit-3.0.8-py_0
pthread-stubs conda-forge/osx-64::pthread-stubs-0.4-h1de35cc_1001
ptyprocess conda-forge/noarch::ptyprocess-0.6.0-py_1001
pycparser conda-forge/noarch::pycparser-2.20-pyh9f0ad1d_2
pydicom conda-forge/noarch::pydicom-2.1.0-pyhd3deb0d_0
pygments conda-forge/noarch::pygments-2.7.2-py_0
pyopengl conda-forge/noarch::pyopengl-3.1.5-py_0
pyopenssl conda-forge/noarch::pyopenssl-19.1.0-py_1
pyparsing conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0
pypubsub conda-forge/noarch::pypubsub-4.0.3-py_0
pyrsistent conda-forge/osx-64::pyrsistent-0.17.3-py36h9de38fb_1
pysocks conda-forge/osx-64::pysocks-1.7.1-py36h2432673_2
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python-utils conda-forge/noarch::python-utils-2.4.0-py_0
python.app conda-forge/osx-64::python.app-1.3-py36h9de38fb_3
python_abi conda-forge/osx-64::python_abi-3.6-1_cp36m
pytz conda-forge/noarch::pytz-2020.4-pyhd8ed1ab_0
pyzmq conda-forge/osx-64::pyzmq-19.0.1-py36h820b253_0
requests conda-forge/noarch::requests-2.24.0-pyh9f0ad1d_0
rtree conda-forge/osx-64::rtree-0.9.4-py36he053a7a_1
scipy conda-forge/osx-64::scipy-1.5.1-py36h1dac7e4_0
send2trash conda-forge/noarch::send2trash-1.5.0-py_0
six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
snowballstemmer conda-forge/noarch::snowballstemmer-2.0.0-py_0
sphinx conda-forge/noarch::sphinx-3.3.0-pyhd8ed1ab_0
sphinx_rtd_theme conda-forge/noarch::sphinx_rtd_theme-0.5.0-pyh9f0ad1d_0
sphinxcontrib-app~ conda-forge/noarch::sphinxcontrib-applehelp-1.0.2-py_0
sphinxcontrib-dev~ conda-forge/noarch::sphinxcontrib-devhelp-1.0.2-py_0
sphinxcontrib-htm~ conda-forge/noarch::sphinxcontrib-htmlhelp-1.0.3-py_0
sphinxcontrib-jsm~ conda-forge/noarch::sphinxcontrib-jsmath-1.0.1-py_0
sphinxcontrib-qth~ conda-forge/noarch::sphinxcontrib-qthelp-1.0.3-py_0
sphinxcontrib-ser~ conda-forge/noarch::sphinxcontrib-serializinghtml-1.1.4-py_0
terminado conda-forge/osx-64::terminado-0.9.1-py36h9f0ad1d_1
testpath conda-forge/noarch::testpath-0.4.4-py_0
tornado conda-forge/osx-64::tornado-6.1-py36h6941dd6_0
traitlets conda-forge/osx-64::traitlets-4.3.3-py36h9f0ad1d_1
trimesh conda-forge/noarch::trimesh-3.8.12-pyh9f0ad1d_0
urllib3 conda-forge/noarch::urllib3-1.25.11-py_0
wcwidth conda-forge/noarch::wcwidth-0.2.5-pyh9f0ad1d_2
webencodings conda-forge/noarch::webencodings-0.5.1-py_1
wxnatpy conda-forge/noarch::wxnatpy-0.3.2-py_0
wxpython conda-forge/osx-64::wxpython-4.0.6-py36h1cd7e00_1
xnat conda-forge/noarch::xnat-0.3.25-pyh9f0ad1d_0
zeromq conda-forge/osx-64::zeromq-4.3.2-h6de7cb9_2
zipp conda-forge/noarch::zipp-3.4.0-py_0
zstd conda-forge/osx-64::zstd-1.4.5-h0384e3a_1
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2020.10.14~ --> conda-forge::ca-certificates-2020.6.20-hecda079_0
certifi pkgs/main/noarch::certifi-2020.6.20-p~ --> conda-forge/osx-64::certifi-2020.6.20-py36h2432673_2
openssl pkgs/main --> conda-forge
Proceed ([y]/n)?
Downloading and Extracting Packages
jupyter_core-4.6.3 | 72 KB | ######################################################### | 100%
numpy-1.19.4 | 5.0 MB | ######################################################### | 100%
pandoc-2.11.0.4 | 14.0 MB | ######################################################### | 100%
kiwisolver-1.2.0 | 57 KB | ######################################################### | 100%
cached-property-1.5. | 10 KB | ######################################################### | 100%
nbconvert-6.0.7 | 519 KB | ######################################################### | 100%
mistune-0.8.4 | 54 KB | ######################################################### | 100%
python_abi-3.6 | 4 KB | ######################################################### | 100%
h5py-3.1.0 | 1.1 MB | ######################################################### | 100%
pygments-2.7.2 | 707 KB | ######################################################### | 100%
pyrsistent-0.17.3 | 87 KB | ######################################################### | 100%
pytz-2020.4 | 229 KB | ######################################################### | 100%
pysocks-1.7.1 | 27 KB | ######################################################### | 100%
trimesh-3.8.12 | 505 KB | ######################################################### | 100%
notebook-6.1.4 | 6.3 MB | ######################################################### | 100%
rtree-0.9.4 | 43 KB | ######################################################### | 100%
scipy-1.5.1 | 19.1 MB | ######################################################### | 100%
argon2-cffi-20.1.0 | 45 KB | ######################################################### | 100%
matplotlib-base-3.3. | 6.8 MB | ######################################################### | 100%
pillow-8.0.1 | 642 KB | ######################################################### | 100%
certifi-2020.6.20 | 151 KB | ######################################################### | 100%
chardet-3.0.4 | 193 KB | ######################################################### | 100%
wxpython-4.0.6 | 15.2 MB | ######################################################### | 100%
zipp-3.4.0 | 11 KB | ######################################################### | 100%
libopenblas-0.3.12 | 8.7 MB | ######################################################### | 100%
python.app-1.3 | 12 KB | ######################################################### | 100%
libblas-3.9.0 | 11 KB | ######################################################### | 100%
docutils-0.16 | 739 KB | ######################################################### | 100%
cffi-1.11.5 | 210 KB | ######################################################### | 100%
pyzmq-19.0.1 | 443 KB | ######################################################### | 100%
jpeg-9d | 250 KB | ######################################################### | 100%
dataclasses-0.7 | 21 KB | ######################################################### | 100%
libcblas-3.9.0 | 11 KB | ######################################################### | 100%
pathlib2-2.3.5 | 35 KB | ######################################################### | 100%
freetype-2.10.4 | 897 KB | ######################################################### | 100%
jedi-0.17.2 | 948 KB | ######################################################### | 100%
backports.lzma-0.0.1 | 48 KB | ######################################################### | 100%
nest-asyncio-1.4.2 | 9 KB | ######################################################### | 100%
sphinx-3.3.0 | 1.5 MB | ######################################################### | 100%
ipython-7.16.1 | 1.1 MB | ######################################################### | 100%
entrypoints-0.3 | 13 KB | ######################################################### | 100%
indexed_gzip-1.3.2 | 407 KB | ######################################################### | 100%
cryptography-3.2.1 | 615 KB | ######################################################### | 100%
libwebp-base-1.1.0 | 757 KB | ######################################################### | 100%
markupsafe-1.1.1 | 25 KB | ######################################################### | 100%
tornado-6.1 | 642 KB | ######################################################### | 100%
terminado-0.9.1 | 25 KB | ######################################################### | 100%
brotlipy-0.7.0 | 357 KB | ######################################################### | 100%
pydicom-2.1.0 | 1.3 MB | ######################################################### | 100%
lcms2-2.11 | 387 KB | ######################################################### | 100%
fsleyes-0.32.3 | 29.9 MB | ######################################################### | 100%
appnope-0.1.0 | 9 KB | ########################################################################################### | 100%
traitlets-4.3.3 | 133 KB | ########################################################################################### | 100%
libpng-1.6.37 | 313 KB | ########################################################################################### | 100%
liblapack-3.9.0 | 11 KB | ########################################################################################### | 100%
ipykernel-5.3.4 | 166 KB | ########################################################################################### | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Could you give it another try and report exactly your entire terminal output? If it still doesn’t work, I recommend you open an issue in the FSLeyes repository and link the issue in this thread.
p.s. in the future you could use markdown formatting for displaying Terminal output.