t2s.nii.gz (2.5 MB)
Thank you so much for letting us know @Allan_Martin . It will be an easy fix 
Ticket opened here: https://github.com/spinalcordtoolbox/spinalcordtoolbox/issues/3686
P.S. Beautiful T2*w image by the way
Hi @Allan_Martin,
I just wanted to let you know that SCT v5.6 has just been released, and it contains a fix for this issue:
Thank you again for your participation in the forum! Your feedback has helped improve SCT for future users. 
Kind regards,
Joshua
1 Like