Why it ran wrong in 4.1.1 sct,although it ran well in4.1.0 sct

SCT
1

Dear jcohenadad , last time I used the 4.1.0version . The script ran well, however,I have to used another 4.1.1version in other computer.The same script always shows error.

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image2356×1634 480 KB

What is the matter? This is the script.
kc.sh (2.6 KB)

2

Hi,
as the error states, your file warp_template2dwi.nii.gz is missing. It has nothing to do with SCT version.
Julien

3

If the file warp_template2dwi.nii.gz is generated automatically by the script?

4

There was likely some errors while running your script. This line likely crashed:

sct_register_to_template -i ${file_dwi_mean}.nii.gz -s ${file_dwi_seg}.nii.gz -l label_C6.nii.gz -ref subject -c t1 -param step=1,type=seg,algo=centermassrot:step=2,type=im,algo=syn,metric=CC,slicewise=0,smooth=0,iter=3 -qc qc
5

If it means I should change my code to sct_register_to_template -i ${file_dwi_mean}.nii.gz -s ${file_dwi_seg}.nii.gz -l label_C6.nii.gz -ref subject -c t1 -param step=1,type=seg,algo=centermassrot:step=2,type=im,algo=syn,metric=CC,slicewise=0,smooth=0,iter=3 -qc qc
I will have a try.

6

No, it does not necessarily mean that. The error could come before. Just check which line failed in your script.

7

Hi,
Is this issue solved on your end?

8

Dear jcohenadad ,thank you .i have finished it.